Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
NPHP3Q7Z494 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AL807761.2-201ENST00000422849 729 ntBASIC20.32■□□□□ 0.84
NPHP3Q7Z494 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 NUDT4P2-201ENST00000578341 546 ntBASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AC107464.3-201ENST00000609172 737 ntBASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AC084781.1-201ENST00000613737 656 ntBASIC20.32■□□□□ 0.84
NPHP3Q7Z494 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 KRT8P31-201ENST00000504812 1408 ntBASIC20.32■□□□□ 0.84
NPHP3Q7Z494 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 REXO1L4P-201ENST00000605109 1937 ntBASIC20.32■□□□□ 0.84
NPHP3Q7Z494 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
NPHP3Q7Z494 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.31■□□□□ 0.84
NPHP3Q7Z494 BANF1P3-201ENST00000412556 261 ntBASIC20.31■□□□□ 0.84
NPHP3Q7Z494 RPSAP15-201ENST00000448168 861 ntBASIC20.31■□□□□ 0.84
NPHP3Q7Z494 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 POLD4-208ENST00000532830 904 ntTSL 3 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 C2orf69P1-201ENST00000563532 1093 ntBASIC20.31■□□□□ 0.84
NPHP3Q7Z494 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 AC027601.3-201ENST00000622907 509 ntBASIC20.31■□□□□ 0.84
NPHP3Q7Z494 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
NPHP3Q7Z494 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 HIST2H2BA-201ENST00000412169 381 ntBASIC20.3■□□□□ 0.84
NPHP3Q7Z494 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 ORAOV1P1-201ENST00000503108 395 ntBASIC20.3■□□□□ 0.84
NPHP3Q7Z494 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 AC009560.1-201ENST00000620208 434 ntBASIC20.3■□□□□ 0.84
NPHP3Q7Z494 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP3Q7Z494 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms