Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 AC104794.3-201ENST00000566840 1248 ntBASIC12.38□□□□□ -0.43
CX3CL1P78423 INO80C-206ENST00000586489 594 ntTSL 3 BASIC12.38□□□□□ -0.43
CX3CL1P78423 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.38□□□□□ -0.43
CX3CL1P78423 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.38□□□□□ -0.43
CX3CL1P78423 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.38□□□□□ -0.43
CX3CL1P78423 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.38□□□□□ -0.43
CX3CL1P78423 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.38□□□□□ -0.43
CX3CL1P78423 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
CX3CL1P78423 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CX3CL1P78423 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.38□□□□□ -0.43
CX3CL1P78423 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
CX3CL1P78423 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CX3CL1P78423 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
CX3CL1P78423 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
CX3CL1P78423 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.37□□□□□ -0.43
CX3CL1P78423 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.37□□□□□ -0.43
CX3CL1P78423 AC013726.1-201ENST00000563747 2285 ntBASIC12.37□□□□□ -0.43
CX3CL1P78423 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CX3CL1P78423 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 LINC00552-201ENST00000625151 2579 ntBASIC12.37□□□□□ -0.43
CX3CL1P78423 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CX3CL1P78423 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 AL589987.1-201ENST00000453380 819 ntBASIC12.37□□□□□ -0.43
CX3CL1P78423 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.37□□□□□ -0.43
CX3CL1P78423 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 DOC2GP-202ENST00000514950 1163 ntBASIC12.37□□□□□ -0.43
CX3CL1P78423 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.37□□□□□ -0.43
CX3CL1P78423 AJ011932.1-201ENST00000621707 465 ntBASIC12.37□□□□□ -0.43
CX3CL1P78423 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CX3CL1P78423 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CX3CL1P78423 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.37□□□□□ -0.43
CX3CL1P78423 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.37□□□□□ -0.43
CX3CL1P78423 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CX3CL1P78423 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CX3CL1P78423 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms