Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
MSX2P35548 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
MSX2P35548 AC002056.1-201ENST00000395613 760 ntBASIC14.64□□□□□ -0.07
MSX2P35548 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.64□□□□□ -0.07
MSX2P35548 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
MSX2P35548 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.64□□□□□ -0.07
MSX2P35548 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.64□□□□□ -0.07
MSX2P35548 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 AC105206.1-202ENST00000314927 2368 ntBASIC14.64□□□□□ -0.07
MSX2P35548 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
MSX2P35548 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 AC126335.2-201ENST00000623362 4637 ntBASIC14.64□□□□□ -0.07
MSX2P35548 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.64□□□□□ -0.07
MSX2P35548 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.64□□□□□ -0.07
MSX2P35548 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
MSX2P35548 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
MSX2P35548 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
MSX2P35548 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
MSX2P35548 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
MSX2P35548 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
MSX2P35548 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
MSX2P35548 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.63□□□□□ -0.07
MSX2P35548 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 AC074386.1-202ENST00000463561 864 ntBASIC14.63□□□□□ -0.07
MSX2P35548 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.63□□□□□ -0.07
MSX2P35548 AL773604.1-201ENST00000617417 272 ntBASIC14.63□□□□□ -0.07
MSX2P35548 AC008267.7-201ENST00000624570 1194 ntBASIC14.63□□□□□ -0.07
MSX2P35548 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.63□□□□□ -0.07
MSX2P35548 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.63□□□□□ -0.07
MSX2P35548 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
MSX2P35548 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.63□□□□□ -0.07
MSX2P35548 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
MSX2P35548 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
MSX2P35548 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.63□□□□□ -0.07
MSX2P35548 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
MSX2P35548 AC138969.3-201ENST00000546612 1459 ntBASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms