Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
ABCA1O95477 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC12.88□□□□□ -0.35
ABCA1O95477 KRT18P43-201ENST00000469825 1281 ntBASIC12.88□□□□□ -0.35
ABCA1O95477 ADM-202ENST00000524948 584 ntTSL 2 BASIC12.88□□□□□ -0.35
ABCA1O95477 AC104982.3-201ENST00000581995 514 ntBASIC12.88□□□□□ -0.35
ABCA1O95477 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC12.88□□□□□ -0.35
ABCA1O95477 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.88□□□□□ -0.35
ABCA1O95477 LINC02228-204ENST00000642115 2962 ntBASIC12.88□□□□□ -0.35
ABCA1O95477 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.88□□□□□ -0.35
ABCA1O95477 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
ABCA1O95477 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.88□□□□□ -0.35
ABCA1O95477 AC026691.1-201ENST00000602502 2017 ntBASIC12.88□□□□□ -0.35
ABCA1O95477 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.88□□□□□ -0.35
ABCA1O95477 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
ABCA1O95477 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
ABCA1O95477 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
ABCA1O95477 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 AC018892.3-201ENST00000623986 2499 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 AC104457.1-201ENST00000401024 814 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 HINT2P1-201ENST00000419438 481 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA1O95477 HNRNPUP1-201ENST00000554987 333 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 AC025279.2-201ENST00000569730 653 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
ABCA1O95477 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.87□□□□□ -0.35
ABCA1O95477 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA1O95477 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA1O95477 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
ABCA1O95477 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA1O95477 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA1O95477 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.87□□□□□ -0.35
ABCA1O95477 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC12.87□□□□□ -0.35
ABCA1O95477 ACKR1-201ENST00000368121 1240 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 AL662890.1-201ENST00000396818 632 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 AL133267.1-201ENST00000398220 340 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 BX284668.4-201ENST00000453917 508 ntBASIC12.87□□□□□ -0.35
ABCA1O95477 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA1O95477 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC12.87□□□□□ -0.35
ABCA1O95477 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
ABCA1O95477 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.87□□□□□ -0.35
ABCA1O95477 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
ABCA1O95477 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
ABCA1O95477 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
ABCA1O95477 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
ABCA1O95477 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
ABCA1O95477 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms