Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
PCDHGA1Q9Y5H4 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.07
PCDHGA1Q9Y5H4 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 AC008267.1-201ENST00000474858 1069 ntBASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 MBP-227ENST00000526111 581 ntTSL 4 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 PRKXP1-201ENST00000561423 1122 ntBASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 AL805961.1-203ENST00000641078 1258 ntBASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 AC004923.1-202ENST00000642106 209 ntBASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.64□□□□□ -0.07
PCDHGA1Q9Y5H4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 SAMD11P1-201ENST00000571429 661 ntBASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 MIR5572-201ENST00000583188 137 ntBASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 AL136295.7-201ENST00000619226 1200 ntBASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDHGA1Q9Y5H4 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms