Protein–RNA interactions for Protein: Q8NHV4

NEDD1, Protein NEDD1, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1Q8NHV4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 RN7SKP230-201ENST00000365642 335 ntBASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 AL136309.1-201ENST00000403917 691 ntBASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 RN7SKP175-201ENST00000408472 289 ntBASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 BTBD6P1-201ENST00000412176 1267 ntBASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 AL591846.1-201ENST00000451736 433 ntBASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 AC091271.1-201ENST00000611877 1162 ntBASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 KRT8P4-201ENST00000509735 1454 ntBASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NEDD1Q8NHV4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 MTX1P1-201ENST00000440904 838 ntBASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 PFN1P12-201ENST00000455938 534 ntBASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
NEDD1Q8NHV4 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 ZBED1P1-201ENST00000502364 1930 ntBASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.64■□□□□ 0.42
NEDD1Q8NHV4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NEDD1Q8NHV4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NEDD1Q8NHV4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NEDD1Q8NHV4 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
NEDD1Q8NHV4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NEDD1Q8NHV4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NEDD1Q8NHV4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NEDD1Q8NHV4 AC011840.2-201ENST00000563063 1520 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms