Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC12.39□□□□□ -0.43
HMGB3O15347 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
HMGB3O15347 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
HMGB3O15347 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 AL589702.1-201ENST00000641229 1509 ntBASIC12.38□□□□□ -0.43
HMGB3O15347 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 PCDHA5-203ENST00000614258 4248 ntBASIC12.38□□□□□ -0.43
HMGB3O15347 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
HMGB3O15347 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
HMGB3O15347 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 FGFR3P6-201ENST00000457012 610 ntBASIC12.38□□□□□ -0.43
HMGB3O15347 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC12.38□□□□□ -0.43
HMGB3O15347 AC025062.2-201ENST00000605477 670 ntBASIC12.38□□□□□ -0.43
HMGB3O15347 AC008608.2-201ENST00000606089 416 ntBASIC12.38□□□□□ -0.43
HMGB3O15347 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC12.38□□□□□ -0.43
HMGB3O15347 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 CICP20-201ENST00000443330 2801 ntBASIC12.38□□□□□ -0.43
HMGB3O15347 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 SPECC1-206ENST00000395530 8133 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 NRP1-208ENST00000395995 5826 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.38□□□□□ -0.43
HMGB3O15347 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HMGB3O15347 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.38□□□□□ -0.43
HMGB3O15347 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 AL137784.3-201ENST00000623858 2288 ntBASIC12.37□□□□□ -0.43
HMGB3O15347 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 MTHFR-210ENST00000641407 2387 ntBASIC12.37□□□□□ -0.43
HMGB3O15347 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 SACS-202ENST00000402364 15134 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.37□□□□□ -0.43
HMGB3O15347 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 AC004899.2-201ENST00000622993 3860 ntBASIC12.37□□□□□ -0.43
HMGB3O15347 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 MGLL-205ENST00000453507 4552 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
HMGB3O15347 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
HMGB3O15347 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.37□□□□□ -0.43
HMGB3O15347 LAGE3P1-201ENST00000425356 484 ntBASIC12.37□□□□□ -0.43
HMGB3O15347 GPX1P2-201ENST00000429271 606 ntBASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms