Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 FAM86C2P-203ENST00000528684 1004 ntBASIC13.46□□□□□ -0.25
NKX3-1Q99801 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
NKX3-1Q99801 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.46□□□□□ -0.25
NKX3-1Q99801 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
NKX3-1Q99801 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.46□□□□□ -0.26
NKX3-1Q99801 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.46□□□□□ -0.26
NKX3-1Q99801 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
NKX3-1Q99801 AC067750.1-201ENST00000608826 6545 ntBASIC13.46□□□□□ -0.26
NKX3-1Q99801 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.26
NKX3-1Q99801 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 AC084364.1-201ENST00000551967 1556 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 AC254562.1-201ENST00000417586 456 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 AC136604.1-201ENST00000418535 575 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 FAM58DP-201ENST00000428076 619 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 METTL21AP1-201ENST00000438852 635 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 AP006288.1-201ENST00000446065 395 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 YBX1P5-201ENST00000509441 847 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 MROH4P-201ENST00000431302 1578 ntBASIC13.45□□□□□ -0.26
NKX3-1Q99801 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
NKX3-1Q99801 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
NKX3-1Q99801 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.44□□□□□ -0.26
NKX3-1Q99801 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
NKX3-1Q99801 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.44□□□□□ -0.26
NKX3-1Q99801 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms