Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AC006529.1-201ENST00000459978 637 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 AC026434.2-201ENST00000506094 1078 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 IGHV1-12-201ENST00000518307 205 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 INO80E-209ENST00000567254 625 ntTSL 2 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 REXO1L2P-201ENST00000425429 2069 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 RNA5SP359-201ENST00000364838 113 ntBASIC15.09■□□□□ 0.01
TTC28Q96AY4 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 AL954722.1-201ENST00000431238 259 ntBASIC15.09■□□□□ 0.01
TTC28Q96AY4 XBP1P1-201ENST00000436573 652 ntBASIC15.09■□□□□ 0.01
TTC28Q96AY4 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 AL118522.1-201ENST00000611368 560 ntBASIC15.09■□□□□ 0.01
TTC28Q96AY4 Z82244.2-201ENST00000632196 448 ntBASIC15.09■□□□□ 0.01
TTC28Q96AY4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 SAP18P2-201ENST00000434334 459 ntBASIC15.09■□□□□ 0.01
TTC28Q96AY4 CDCA4P4-201ENST00000435216 680 ntBASIC15.09■□□□□ 0.01
TTC28Q96AY4 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC15.09■□□□□ 0.01
TTC28Q96AY4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TTC28Q96AY4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.08■□□□□ 0.01
TTC28Q96AY4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
TTC28Q96AY4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
TTC28Q96AY4 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
TTC28Q96AY4 OR51A9P-201ENST00000422578 911 ntBASIC15.08■□□□□ 0.01
TTC28Q96AY4 SNRPCP15-201ENST00000424055 192 ntBASIC15.08■□□□□ 0.01
TTC28Q96AY4 ERP29P1-201ENST00000442902 706 ntBASIC15.08■□□□□ 0.01
TTC28Q96AY4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.08■□□□□ 0.01
TTC28Q96AY4 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC15.08■□□□□ 0.01
TTC28Q96AY4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TTC28Q96AY4 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.08■□□□□ 0.01
TTC28Q96AY4 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC15.08■□□□□ 0.01
TTC28Q96AY4 ST5-261ENST00000626808 1071 ntTSL 5 BASIC15.08■□□□□ 0.01
TTC28Q96AY4 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TTC28Q96AY4 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TTC28Q96AY4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.08■□□□□ 0
TTC28Q96AY4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TTC28Q96AY4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
TTC28Q96AY4 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC15.08■□□□□ 0
TTC28Q96AY4 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
TTC28Q96AY4 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC15.08■□□□□ 0
TTC28Q96AY4 PFN2-212ENST00000490975 858 ntTSL 4 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms