Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
CCDC116Q8IYX3 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC116Q8IYX3 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 MEP1AP4-201ENST00000423244 1087 ntBASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 SERBP1P5-201ENST00000510079 1181 ntBASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 COA4-204ENST00000541455 1038 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC116Q8IYX3 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 REXO1L2P-201ENST00000425429 2069 ntBASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 SPTLC1P1-201ENST00000447199 261 ntBASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC116Q8IYX3 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC116Q8IYX3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC116Q8IYX3 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms