Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MBD6-203ENST00000546805 596 ntTSL 513.14□□□□□ -0.316e-11■■■■■ 91.9
SF3B1O75533 XRRA1-216ENST00000531852 690 ntTSL 312.76□□□□□ -0.373e-7■■■■■ 91.9
SF3B1O75533 PPFIA1-207ENST00000526347 862 ntTSL 512.67□□□□□ -0.386e-11■■■■■ 91.9
SF3B1O75533 SLC37A3-220ENST00000485861 534 ntTSL 312.41□□□□□ -0.426e-11■■■■■ 91.9
SF3B1O75533 RBSN-206ENST00000463214 591 ntTSL 212.18□□□□□ -0.467e-6■■■■■ 91.9
SF3B1O75533 SLC37A3-213ENST00000473707 599 ntTSL 312.11□□□□□ -0.476e-11■■■■■ 91.9
SF3B1O75533 DPH7-211ENST00000481839 798 ntTSL 312.07□□□□□ -0.486e-11■■■■■ 91.9
SF3B1O75533 PTBP3-206ENST00000450374 368 ntTSL 511.85□□□□□ -0.516e-11■■■■■ 91.9
SF3B1O75533 CAMKK1-204ENST00000573483 3898 ntTSL 211.72□□□□□ -0.537e-6■■■■■ 91.9
SF3B1O75533 DHX35-202ENST00000373323 2347 ntTSL 2 BASIC11.52□□□□□ -0.563e-6■■■■■ 91.9
SF3B1O75533 MADD-219ENST00000524530 566 ntTSL 511.42□□□□□ -0.586e-11■■■■■ 91.9
SF3B1O75533 GLCCI1-205ENST00000460897 412 ntTSL 211.22□□□□□ -0.616e-11■■■■■ 91.9
SF3B1O75533 USP19-204ENST00000398896 3907 ntAPPRIS ALT2 TSL 1 (best)10.99□□□□□ -0.657e-6■■■■■ 91.9
SF3B1O75533 PPFIA1-208ENST00000526369 564 ntTSL 410.93□□□□□ -0.666e-11■■■■■ 91.9
SF3B1O75533 BORA-206ENST00000613797 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.687e-6■■■■■ 91.9
SF3B1O75533 MLH1-201ENST00000231790 2752 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.696e-11■■■■■ 91.9
SF3B1O75533 FHL3-204ENST00000483132 607 ntTSL 210.72□□□□□ -0.696e-11■■■■■ 91.9
SF3B1O75533 MLH1-221ENST00000536378 2567 ntTSL 2 BASIC10.48□□□□□ -0.736e-11■■■■■ 91.9
SF3B1O75533 BORA-203ENST00000390667 2936 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.747e-6■■■■■ 91.9
SF3B1O75533 DPH7-205ENST00000470855 479 ntTSL 510.2□□□□□ -0.786e-11■■■■■ 91.9
SF3B1O75533 MLH1-222ENST00000539477 2366 ntTSL 2 BASIC10.02□□□□□ -0.816e-11■■■■■ 91.9
SF3B1O75533 DHX35-203ENST00000373325 3287 ntTSL 5 BASIC9.97□□□□□ -0.813e-6■■■■■ 91.9
SF3B1O75533 SF3A3-201ENST00000373019 3673 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.817e-6■■■■■ 91.9
SF3B1O75533 MLH1-216ENST00000458205 2608 ntTSL 1 (best) BASIC9.89□□□□□ -0.836e-11■■■■■ 91.9
SF3B1O75533 PPFIA1-213ENST00000530294 977 ntTSL 59.87□□□□□ -0.836e-11■■■■■ 91.9
SF3B1O75533 MGST2-206ENST00000515137 1013 ntTSL 1 (best)9.77□□□□□ -0.856e-11■■■■■ 91.9
SF3B1O75533 SLC37A3-207ENST00000464834 601 ntTSL 49.61□□□□□ -0.876e-11■■■■■ 91.9
SF3B1O75533 PDLIM5-213ENST00000509357 554 ntTSL 59.55□□□□□ -0.886e-11■■■■■ 91.9
SF3B1O75533 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC9.47□□□□□ -0.896e-11■■■■■ 91.9
SF3B1O75533 RABGAP1L-219ENST00000526253 439 ntTSL 59.38□□□□□ -0.917e-6■■■■■ 91.9
SF3B1O75533 CCT5-207ENST00000509846 546 ntTSL 29.34□□□□□ -0.916e-11■■■■■ 91.9
SF3B1O75533 DHX35-206ENST00000484417 3318 ntTSL 29.24□□□□□ -0.933e-6■■■■■ 91.9
SF3B1O75533 TMEM43-201ENST00000306077 3341 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.961e-6■■■■■ 91.9
SF3B1O75533 MLH1-213ENST00000456676 2230 ntTSL 1 (best)8.81□□□□□ -16e-11■■■■■ 91.9
SF3B1O75533 MADD-220ENST00000524686 580 ntTSL 48.7□□□□□ -1.026e-11■■■■■ 91.9
SF3B1O75533 DHX35-201ENST00000252011 3325 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.023e-6■■■■■ 91.9
SF3B1O75533 CEP170-219ENST00000521911 571 ntTSL 28.64□□□□□ -1.037e-6■■■■■ 91.9
SF3B1O75533 RABGAP1L-211ENST00000465412 710 ntTSL 58.3□□□□□ -1.081e-6■■■■■ 91.9
SF3B1O75533 STRN3-208ENST00000556577 514 ntTSL 58.24□□□□□ -1.097e-6■■■■■ 91.9
SF3B1O75533 DCAF6-211ENST00000489398 1727 ntTSL 28.19□□□□□ -1.17e-6■■■■■ 91.9
SF3B1O75533 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC7.8□□□□□ -1.161e-6■■■■■ 91.9
SF3B1O75533 PDLIM5-215ENST00000511586 547 ntTSL 47.78□□□□□ -1.166e-11■■■■■ 91.9
SF3B1O75533 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.186e-11■■■■■ 91.9
SF3B1O75533 KIDINS220-210ENST00000496383 3220 ntTSL 57.46□□□□□ -1.216e-11■■■■■ 91.9
SF3B1O75533 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.246e-11■■■■■ 91.9
SF3B1O75533 PPFIA1-217ENST00000530798 710 ntTSL 57.31□□□□□ -1.246e-11■■■■■ 91.9
SF3B1O75533 ADGRV1-236ENST00000640779 4680 ntTSL 57.3□□□□□ -1.246e-11■■■■■ 91.9
SF3B1O75533 GLCCI1-206ENST00000470583 555 ntTSL 47.28□□□□□ -1.246e-11■■■■■ 91.9
SF3B1O75533 NFX1-202ENST00000379521 3609 ntTSL 1 (best)7.25□□□□□ -1.256e-11■■■■■ 91.9
SF3B1O75533 DDX50-204ENST00000471475 888 ntTSL 57.22□□□□□ -1.256e-11■■■■■ 91.9
SF3B1O75533 CTNNB1-213ENST00000482042 1366 ntTSL 27.19□□□□□ -1.266e-11■■■■■ 91.9
SF3B1O75533 ADGRV1-224ENST00000640012 3241 ntTSL 57.1□□□□□ -1.276e-11■■■■■ 91.9
SF3B1O75533 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC7.02□□□□□ -1.296e-11■■■■■ 91.9
SF3B1O75533 UMAD1-201ENST00000406829 2111 ntTSL 47□□□□□ -1.292e-7■■■■■ 91.9
SF3B1O75533 MLH1-209ENST00000447829 608 ntTSL 1 (best)6.96□□□□□ -1.36e-11■■■■■ 91.9
SF3B1O75533 MLH1-215ENST00000458009 660 ntTSL 1 (best)6.96□□□□□ -1.36e-11■■■■■ 91.9
SF3B1O75533 CEP170-208ENST00000461671 642 ntTSL 56.92□□□□□ -1.37e-6■■■■■ 91.9
SF3B1O75533 CCT5-211ENST00000512975 578 ntTSL 46.88□□□□□ -1.316e-11■■■■■ 91.9
SF3B1O75533 TMEM135-206ENST00000529023 1095 ntTSL 26.77□□□□□ -1.325e-6■■■■■ 91.9
SF3B1O75533 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC6.72□□□□□ -1.331e-6■■■■■ 91.9
SF3B1O75533 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.71□□□□□ -1.347e-6■■■■■ 91.9
SF3B1O75533 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.68□□□□□ -1.346e-11■■■■■ 91.9
SF3B1O75533 EIF2B3-204ENST00000439363 892 ntTSL 36.61□□□□□ -1.357e-6■■■■■ 91.9
SF3B1O75533 CEP170-222ENST00000522895 616 ntTSL 36.52□□□□□ -1.377e-6■■■■■ 91.9
SF3B1O75533 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.42□□□□□ -1.387e-6■■■■■ 91.9
SF3B1O75533 ADGRV1-218ENST00000639473 6608 ntTSL 56.4□□□□□ -1.396e-11■■■■■ 91.9
SF3B1O75533 MGST2-205ENST00000515067 437 ntTSL 36.39□□□□□ -1.396e-11■■■■■ 91.9
SF3B1O75533 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.2□□□□□ -1.421e-6■■■■■ 91.9
SF3B1O75533 NF1-210ENST00000479614 1114 ntTSL 56.11□□□□□ -1.436e-11■■■■■ 91.9
SF3B1O75533 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.01□□□□□ -1.456e-11■■■■■ 91.9
SF3B1O75533 KIDINS220-207ENST00000474782 748 ntTSL 35.98□□□□□ -1.456e-11■■■■■ 91.9
SF3B1O75533 PRKAR1A-221ENST00000592800 1036 ntTSL 25.76□□□□□ -1.496e-11■■■■■ 91.9
SF3B1O75533 PRKAR1A-212ENST00000586541 570 ntTSL 55.6□□□□□ -1.516e-11■■■■■ 91.9
SF3B1O75533 ZNF654-203ENST00000623596 548 ntTSL 55.54□□□□□ -1.523e-6■■■■■ 91.9
SF3B1O75533 PPFIA1-205ENST00000526074 573 ntTSL 35.5□□□□□ -1.536e-11■■■■■ 91.9
SF3B1O75533 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.31□□□□□ -1.566e-11■■■■■ 91.9
SF3B1O75533 EPCAM-206ENST00000490733 752 ntTSL 35.13□□□□□ -1.597e-6■■■■■ 91.9
SF3B1O75533 MLH1-202ENST00000413212 684 ntTSL 54.68□□□□□ -1.666e-11■■■■■ 91.9
SF3B1O75533 AC006042.3-201ENST00000454684 1469 ntBASIC4.35□□□□□ -1.716e-11■■■■■ 91.9
SF3B1O75533 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.33□□□□□ -1.726e-11■■■■■ 91.9
SF3B1O75533 PPP1R37-207ENST00000544897 527 ntTSL 23.93□□□□□ -1.787e-6■■■■■ 91.9
SF3B1O75533 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.87□□□□□ -1.797e-6■■■■■ 91.9
SF3B1O75533 NF1-206ENST00000466819 1177 ntTSL 53.68□□□□□ -1.826e-11■■■■■ 91.9
SF3B1O75533 FUBP3-202ENST00000465949 676 ntTSL 53.47□□□□□ -1.856e-11■■■■■ 91.9
SF3B1O75533 CEP170-201ENST00000336415 5961 ntTSL 53.38□□□□□ -1.877e-6■■■■■ 91.9
SF3B1O75533 ZNF577-212ENST00000639183 530 ntTSL 42.22□□□□□ -2.056e-11■■■■■ 91.9
SF3B1O75533 IQSEC1-204ENST00000613206 3582 ntTSL 2 BASIC13.03□□□□□ -0.321e-6■■■■■ 91.9
SF3B1O75533 C9orf3-201ENST00000277198 1966 ntTSL 2 BASIC13.26□□□□□ -0.296e-6■■■■■ 91.8
SF3B1O75533 PLEKHH1-201ENST00000329153 6604 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.374e-8■■■■■ 91.8
SF3B1O75533 STAG2-207ENST00000394478 676 ntTSL 53□□□□□ -1.937e-9■■■■■ 91.8
SF3B1O75533 CLOCK-203ENST00000435527 746 ntTSL 319.76■□□□□ 0.752e-6■■■■■ 91.7
SF3B1O75533 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.122e-6■■■■■ 91.7
SF3B1O75533 TBCD-224ENST00000576760 1059 ntTSL 513.26□□□□□ -0.293e-6■■■■■ 91.7
SF3B1O75533 ZC3H11A-206ENST00000453771 1892 ntTSL 511.85□□□□□ -0.512e-6■■■■■ 91.7
SF3B1O75533 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.12e-6■■■■■ 91.7
SF3B1O75533 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.282e-6■■■■■ 91.7
SF3B1O75533 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.332e-6■■■■■ 91.7
SF3B1O75533 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.342e-6■■■■■ 91.7
SF3B1O75533 ZC3H11A-213ENST00000638800 7078 ntTSL 55.71□□□□□ -1.492e-6■■■■■ 91.7
SF3B1O75533 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.32□□□□□ -1.562e-6■■■■■ 91.7
Retrieved 100 of 46,956 protein–RNA pairs in 1303.6 ms