Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.44■■□□□ 1.34
LRRC40Q9H9A6 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRRC40Q9H9A6 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LRRC40Q9H9A6 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRRC40Q9H9A6 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.44■■□□□ 1.34
LRRC40Q9H9A6 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LRRC40Q9H9A6 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC40Q9H9A6 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRC40Q9H9A6 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
LRRC40Q9H9A6 PVT1_1.1-201ENST00000615125 194 ntBASIC23.42■■□□□ 1.34
LRRC40Q9H9A6 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRC40Q9H9A6 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRC40Q9H9A6 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.42■■□□□ 1.34
LRRC40Q9H9A6 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 AC010980.1-201ENST00000587192 1142 ntBASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 ABCB10P4-201ENST00000566803 2184 ntBASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 AL161729.1-201ENST00000604104 1402 ntBASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LRRC40Q9H9A6 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.4■■□□□ 1.34
LRRC40Q9H9A6 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.39■■□□□ 1.34
LRRC40Q9H9A6 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
LRRC40Q9H9A6 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.39■■□□□ 1.33
LRRC40Q9H9A6 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRRC40Q9H9A6 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRRC40Q9H9A6 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.39■■□□□ 1.33
LRRC40Q9H9A6 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 AL033527.3-201ENST00000566366 1196 ntBASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC40Q9H9A6 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC40Q9H9A6 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.37■■□□□ 1.33
LRRC40Q9H9A6 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC40Q9H9A6 AC120024.1-201ENST00000562672 995 ntBASIC23.37■■□□□ 1.33
LRRC40Q9H9A6 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC40Q9H9A6 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC40Q9H9A6 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC40Q9H9A6 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.36■■□□□ 1.33
LRRC40Q9H9A6 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC40Q9H9A6 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.36■■□□□ 1.33
LRRC40Q9H9A6 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC40Q9H9A6 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.36■■□□□ 1.33
LRRC40Q9H9A6 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.36■■□□□ 1.33
LRRC40Q9H9A6 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC40Q9H9A6 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC40Q9H9A6 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRC40Q9H9A6 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC40Q9H9A6 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC40Q9H9A6 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC40Q9H9A6 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC40Q9H9A6 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC40Q9H9A6 KRT18P24-201ENST00000344739 1156 ntBASIC23.34■■□□□ 1.33
LRRC40Q9H9A6 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.34■■□□□ 1.33
LRRC40Q9H9A6 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
LRRC40Q9H9A6 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
LRRC40Q9H9A6 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
LRRC40Q9H9A6 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
LRRC40Q9H9A6 AL022069.1-201ENST00000568025 1636 ntBASIC23.33■■□□□ 1.33
LRRC40Q9H9A6 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC40Q9H9A6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
LRRC40Q9H9A6 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC40Q9H9A6 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms