Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SSX3Q99909 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.17■□□□□ 0.66
SSX3Q99909 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX3Q99909 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SSX3Q99909 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX3Q99909 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SSX3Q99909 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX3Q99909 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX3Q99909 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSX3Q99909 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX3Q99909 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX3Q99909 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.16■□□□□ 0.66
SSX3Q99909 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX3Q99909 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.16■□□□□ 0.66
SSX3Q99909 AC009299.2-201ENST00000482477 511 ntBASIC19.16■□□□□ 0.66
SSX3Q99909 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.16■□□□□ 0.66
SSX3Q99909 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX3Q99909 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.16■□□□□ 0.66
SSX3Q99909 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SSX3Q99909 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SSX3Q99909 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSX3Q99909 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.14■□□□□ 0.66
SSX3Q99909 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SSX3Q99909 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SSX3Q99909 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.14■□□□□ 0.65
SSX3Q99909 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SSX3Q99909 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.14■□□□□ 0.65
SSX3Q99909 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SSX3Q99909 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSX3Q99909 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SSX3Q99909 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX3Q99909 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX3Q99909 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX3Q99909 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX3Q99909 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSX3Q99909 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SSX3Q99909 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SSX3Q99909 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.13■□□□□ 0.65
SSX3Q99909 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX3Q99909 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SSX3Q99909 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX3Q99909 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX3Q99909 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SSX3Q99909 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.12■□□□□ 0.65
SSX3Q99909 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.12■□□□□ 0.65
SSX3Q99909 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX3Q99909 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SSX3Q99909 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SSX3Q99909 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
SSX3Q99909 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SSX3Q99909 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.11■□□□□ 0.65
SSX3Q99909 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.11■□□□□ 0.65
SSX3Q99909 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.11■□□□□ 0.65
SSX3Q99909 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.11■□□□□ 0.65
SSX3Q99909 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SSX3Q99909 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.11■□□□□ 0.65
SSX3Q99909 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
SSX3Q99909 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.11■□□□□ 0.65
SSX3Q99909 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX3Q99909 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.1■□□□□ 0.65
SSX3Q99909 AC012676.1-201ENST00000574705 1949 ntBASIC19.1■□□□□ 0.65
SSX3Q99909 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX3Q99909 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.1■□□□□ 0.65
SSX3Q99909 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SSX3Q99909 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.1■□□□□ 0.65
SSX3Q99909 AL592295.1-201ENST00000400984 884 ntBASIC19.1■□□□□ 0.65
SSX3Q99909 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.1■□□□□ 0.65
SSX3Q99909 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX3Q99909 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX3Q99909 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
SSX3Q99909 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX3Q99909 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SSX3Q99909 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX3Q99909 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.09■□□□□ 0.65
SSX3Q99909 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX3Q99909 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.09■□□□□ 0.65
SSX3Q99909 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms