Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 SPCS2P3-201ENST00000500401 656 ntBASIC24.77■■□□□ 1.56
VPS36Q86VN1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
VPS36Q86VN1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
VPS36Q86VN1 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
VPS36Q86VN1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.77■■□□□ 1.56
VPS36Q86VN1 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
VPS36Q86VN1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS36Q86VN1 CASK-201ENST00000378154 2494 ntTSL 5 BASIC24.76■■□□□ 1.55
VPS36Q86VN1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.76■■□□□ 1.55
VPS36Q86VN1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS36Q86VN1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS36Q86VN1 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS36Q86VN1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.76■■□□□ 1.55
VPS36Q86VN1 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS36Q86VN1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS36Q86VN1 DUSP8P5-201ENST00000422884 1815 ntBASIC24.75■■□□□ 1.55
VPS36Q86VN1 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS36Q86VN1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS36Q86VN1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS36Q86VN1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.75■■□□□ 1.55
VPS36Q86VN1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.75■■□□□ 1.55
VPS36Q86VN1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.75■■□□□ 1.55
VPS36Q86VN1 U85056.1-201ENST00000616429 682 ntBASIC24.75■■□□□ 1.55
VPS36Q86VN1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
VPS36Q86VN1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS36Q86VN1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC24.75■■□□□ 1.55
VPS36Q86VN1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
VPS36Q86VN1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
VPS36Q86VN1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
VPS36Q86VN1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
VPS36Q86VN1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
VPS36Q86VN1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.73■■□□□ 1.55
VPS36Q86VN1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
VPS36Q86VN1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
VPS36Q86VN1 DUX4L9-201ENST00000449051 1259 ntBASIC24.73■■□□□ 1.55
VPS36Q86VN1 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.73■■□□□ 1.55
VPS36Q86VN1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.73■■□□□ 1.55
VPS36Q86VN1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.73■■□□□ 1.55
VPS36Q86VN1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
VPS36Q86VN1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.73■■□□□ 1.55
VPS36Q86VN1 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
VPS36Q86VN1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
VPS36Q86VN1 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.72■■□□□ 1.55
VPS36Q86VN1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
VPS36Q86VN1 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
VPS36Q86VN1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
VPS36Q86VN1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
VPS36Q86VN1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
VPS36Q86VN1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
VPS36Q86VN1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC24.71■■□□□ 1.55
VPS36Q86VN1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.71■■□□□ 1.55
VPS36Q86VN1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC24.71■■□□□ 1.55
VPS36Q86VN1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
VPS36Q86VN1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
VPS36Q86VN1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.71■■□□□ 1.55
VPS36Q86VN1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
VPS36Q86VN1 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
VPS36Q86VN1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
VPS36Q86VN1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
VPS36Q86VN1 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
VPS36Q86VN1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.7■■□□□ 1.55
VPS36Q86VN1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
VPS36Q86VN1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
VPS36Q86VN1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
VPS36Q86VN1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.7■■□□□ 1.54
VPS36Q86VN1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
VPS36Q86VN1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
VPS36Q86VN1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
VPS36Q86VN1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
VPS36Q86VN1 AL161729.1-201ENST00000604104 1402 ntBASIC24.69■■□□□ 1.54
VPS36Q86VN1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.69■■□□□ 1.54
VPS36Q86VN1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
VPS36Q86VN1 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
VPS36Q86VN1 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
VPS36Q86VN1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
VPS36Q86VN1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
VPS36Q86VN1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC24.69■■□□□ 1.54
VPS36Q86VN1 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
VPS36Q86VN1 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
VPS36Q86VN1 AC012676.1-201ENST00000574705 1949 ntBASIC24.68■■□□□ 1.54
VPS36Q86VN1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC24.68■■□□□ 1.54
VPS36Q86VN1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.68■■□□□ 1.54
VPS36Q86VN1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.68■■□□□ 1.54
VPS36Q86VN1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
VPS36Q86VN1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC24.67■■□□□ 1.54
VPS36Q86VN1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
VPS36Q86VN1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.67■■□□□ 1.54
VPS36Q86VN1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
VPS36Q86VN1 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
VPS36Q86VN1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
VPS36Q86VN1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.67■■□□□ 1.54
VPS36Q86VN1 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms