Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.8■■□□□ 1.88
KRT40Q6A162 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.8■■□□□ 1.88
KRT40Q6A162 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.8■■□□□ 1.88
KRT40Q6A162 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
KRT40Q6A162 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
KRT40Q6A162 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
KRT40Q6A162 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.8■■□□□ 1.88
KRT40Q6A162 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
KRT40Q6A162 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
KRT40Q6A162 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
KRT40Q6A162 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.79■■□□□ 1.88
KRT40Q6A162 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.79■■□□□ 1.88
KRT40Q6A162 AC022616.5-201ENST00000518796 181 ntBASIC26.79■■□□□ 1.88
KRT40Q6A162 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
KRT40Q6A162 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
KRT40Q6A162 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
KRT40Q6A162 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
KRT40Q6A162 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.78■■□□□ 1.88
KRT40Q6A162 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.78■■□□□ 1.88
KRT40Q6A162 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
KRT40Q6A162 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
KRT40Q6A162 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.77■■□□□ 1.88
KRT40Q6A162 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.77■■□□□ 1.88
KRT40Q6A162 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
KRT40Q6A162 AL356441.2-201ENST00000443009 864 ntBASIC26.77■■□□□ 1.88
KRT40Q6A162 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.77■■□□□ 1.88
KRT40Q6A162 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
KRT40Q6A162 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.88
KRT40Q6A162 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.76■■□□□ 1.88
KRT40Q6A162 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
KRT40Q6A162 AC011551.1-201ENST00000614101 683 ntBASIC26.76■■□□□ 1.87
KRT40Q6A162 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
KRT40Q6A162 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
KRT40Q6A162 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC26.76■■□□□ 1.87
KRT40Q6A162 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
KRT40Q6A162 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
KRT40Q6A162 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
KRT40Q6A162 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
KRT40Q6A162 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.74■■□□□ 1.87
KRT40Q6A162 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.74■■□□□ 1.87
KRT40Q6A162 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC26.74■■□□□ 1.87
KRT40Q6A162 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.74■■□□□ 1.87
KRT40Q6A162 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.74■■□□□ 1.87
KRT40Q6A162 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC26.74■■□□□ 1.87
KRT40Q6A162 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.74■■□□□ 1.87
KRT40Q6A162 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC26.74■■□□□ 1.87
KRT40Q6A162 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.74■■□□□ 1.87
KRT40Q6A162 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
KRT40Q6A162 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
KRT40Q6A162 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
KRT40Q6A162 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
KRT40Q6A162 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC26.73■■□□□ 1.87
KRT40Q6A162 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC26.73■■□□□ 1.87
KRT40Q6A162 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC26.73■■□□□ 1.87
KRT40Q6A162 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
KRT40Q6A162 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.72■■□□□ 1.87
KRT40Q6A162 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC26.72■■□□□ 1.87
KRT40Q6A162 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.72■■□□□ 1.87
KRT40Q6A162 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.72■■□□□ 1.87
KRT40Q6A162 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
KRT40Q6A162 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.71■■□□□ 1.87
KRT40Q6A162 AC120024.1-201ENST00000562672 995 ntBASIC26.71■■□□□ 1.87
KRT40Q6A162 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
KRT40Q6A162 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
KRT40Q6A162 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
KRT40Q6A162 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
KRT40Q6A162 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
KRT40Q6A162 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
KRT40Q6A162 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
KRT40Q6A162 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.7■■□□□ 1.87
KRT40Q6A162 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.87
KRT40Q6A162 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.7■■□□□ 1.86
KRT40Q6A162 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.7■■□□□ 1.86
KRT40Q6A162 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC26.69■■□□□ 1.86
KRT40Q6A162 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.69■■□□□ 1.86
KRT40Q6A162 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.69■■□□□ 1.86
KRT40Q6A162 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC26.69■■□□□ 1.86
KRT40Q6A162 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.69■■□□□ 1.86
KRT40Q6A162 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
KRT40Q6A162 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC26.69■■□□□ 1.86
KRT40Q6A162 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC26.68■■□□□ 1.86
KRT40Q6A162 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
KRT40Q6A162 ABCB10P4-201ENST00000566803 2184 ntBASIC26.68■■□□□ 1.86
KRT40Q6A162 MIR4508-201ENST00000584178 70 ntBASIC26.68■■□□□ 1.86
KRT40Q6A162 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC26.68■■□□□ 1.86
KRT40Q6A162 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.68■■□□□ 1.86
KRT40Q6A162 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
KRT40Q6A162 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
KRT40Q6A162 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
KRT40Q6A162 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
KRT40Q6A162 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC26.67■■□□□ 1.86
KRT40Q6A162 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.67■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms