Protein–RNA interactions for Protein: P49450

CENPA, Histone H3-like centromeric protein A, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPAP49450 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.75■□□□□ 0.91
CENPAP49450 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CENPAP49450 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CENPAP49450 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CENPAP49450 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CENPAP49450 SPCS2P3-201ENST00000500401 656 ntBASIC20.74■□□□□ 0.91
CENPAP49450 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.74■□□□□ 0.91
CENPAP49450 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.74■□□□□ 0.91
CENPAP49450 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CENPAP49450 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CENPAP49450 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CENPAP49450 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CENPAP49450 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.74■□□□□ 0.91
CENPAP49450 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
CENPAP49450 HLA-L-211ENST00000482052 1765 ntBASIC20.73■□□□□ 0.91
CENPAP49450 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.73■□□□□ 0.91
CENPAP49450 MIR6765-201ENST00000614092 87 ntBASIC20.73■□□□□ 0.91
CENPAP49450 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CENPAP49450 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.72■□□□□ 0.91
CENPAP49450 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CENPAP49450 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CENPAP49450 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.72■□□□□ 0.91
CENPAP49450 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.72■□□□□ 0.91
CENPAP49450 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CENPAP49450 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CENPAP49450 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CENPAP49450 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.71■□□□□ 0.91
CENPAP49450 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.71■□□□□ 0.91
CENPAP49450 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 DUX4L9-201ENST00000449051 1259 ntBASIC20.71■□□□□ 0.91
CENPAP49450 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 U85056.1-201ENST00000616429 682 ntBASIC20.71■□□□□ 0.91
CENPAP49450 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.71■□□□□ 0.91
CENPAP49450 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CENPAP49450 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
CENPAP49450 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CENPAP49450 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.7■□□□□ 0.9
CENPAP49450 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CENPAP49450 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CENPAP49450 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CENPAP49450 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CENPAP49450 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CENPAP49450 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CENPAP49450 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CENPAP49450 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CENPAP49450 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CENPAP49450 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.69■□□□□ 0.9
CENPAP49450 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.69■□□□□ 0.9
CENPAP49450 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CENPAP49450 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CENPAP49450 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CENPAP49450 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CENPAP49450 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
CENPAP49450 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CENPAP49450 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CENPAP49450 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.68■□□□□ 0.9
CENPAP49450 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CENPAP49450 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CENPAP49450 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.68■□□□□ 0.9
CENPAP49450 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.67■□□□□ 0.9
CENPAP49450 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.67■□□□□ 0.9
CENPAP49450 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.67■□□□□ 0.9
CENPAP49450 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CENPAP49450 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CENPAP49450 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.67■□□□□ 0.9
CENPAP49450 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
CENPAP49450 AC004812.2-201ENST00000611079 2094 ntBASIC20.66■□□□□ 0.9
CENPAP49450 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CENPAP49450 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CENPAP49450 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CENPAP49450 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CENPAP49450 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
CENPAP49450 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.66■□□□□ 0.9
CENPAP49450 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CENPAP49450 ABCB10P4-201ENST00000566803 2184 ntBASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms