Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DQA1P01909 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HLA-DQA1P01909 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
HLA-DQA1P01909 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.32■□□□□ 0.36
HLA-DQA1P01909 GUSBP5-202ENST00000510805 1989 ntBASIC17.32■□□□□ 0.36
HLA-DQA1P01909 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HLA-DQA1P01909 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 ECEL1P1-201ENST00000373592 1742 ntBASIC17.31■□□□□ 0.36
HLA-DQA1P01909 CIB2-204ENST00000557846 934 ntTSL 3 BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HLA-DQA1P01909 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 AC007375.3-201ENST00000600936 2314 ntBASIC17.3■□□□□ 0.36
HLA-DQA1P01909 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 FOXO3B-201ENST00000395675 1928 ntBASIC17.3■□□□□ 0.36
HLA-DQA1P01909 RPS2P35-201ENST00000443417 897 ntBASIC17.3■□□□□ 0.36
HLA-DQA1P01909 MIR6090-201ENST00000622481 60 ntBASIC17.3■□□□□ 0.36
HLA-DQA1P01909 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.3■□□□□ 0.36
HLA-DQA1P01909 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC17.29■□□□□ 0.36
HLA-DQA1P01909 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HLA-DQA1P01909 SLC25A24-204ENST00000569674 2357 ntBASIC17.28■□□□□ 0.36
HLA-DQA1P01909 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.27■□□□□ 0.36
HLA-DQA1P01909 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC17.27■□□□□ 0.36
HLA-DQA1P01909 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HLA-DQA1P01909 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HLA-DQA1P01909 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HLA-DQA1P01909 BOD1-206ENST00000480951 814 ntTSL 2 BASIC17.27■□□□□ 0.36
HLA-DQA1P01909 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC17.27■□□□□ 0.35
HLA-DQA1P01909 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 MIR6089-201ENST00000616698 64 ntBASIC17.26■□□□□ 0.35
HLA-DQA1P01909 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HLA-DQA1P01909 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DQA1P01909 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DQA1P01909 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HLA-DQA1P01909 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms