Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS9D1Q9Y2B5 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
VPS9D1Q9Y2B5 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS9D1Q9Y2B5 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS9D1Q9Y2B5 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AC091951.1-201ENST00000512854 2465 ntBASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 REC114-201ENST00000331090 927 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AC117500.1-201ENST00000497352 755 ntBASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 RNA5SP421-201ENST00000516864 134 ntBASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AC106028.4-201ENST00000614509 607 ntBASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 AL136379.1-201ENST00000623471 2642 ntBASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS9D1Q9Y2B5 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 PAICSP2-201ENST00000429118 1150 ntBASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 RPL13AP25-201ENST00000484130 612 ntBASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 RARRES2P5-201ENST00000564013 466 ntBASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS9D1Q9Y2B5 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms