Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 RN7SKP230-201ENST00000365642 335 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 RN7SKP175-201ENST00000408472 289 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 AC079178.1-201ENST00000420915 656 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 AC005730.2-201ENST00000564549 1184 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 AL022328.3-201ENST00000607943 679 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 AC244157.2-201ENST00000616239 1006 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 AC105917.1-201ENST00000506637 2539 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.16■□□□□ 0.34
COL20A1Q9P218 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 AC011840.2-201ENST00000563063 1520 ntBASIC17.16■□□□□ 0.34
COL20A1Q9P218 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL20A1Q9P218 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 AL162727.3-201ENST00000635661 2787 ntBASIC17.15■□□□□ 0.34
COL20A1Q9P218 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 KRT8P13-201ENST00000463294 1010 ntBASIC17.15■□□□□ 0.34
COL20A1Q9P218 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 MIR4783-201ENST00000580343 82 ntBASIC17.15■□□□□ 0.34
COL20A1Q9P218 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 AC138696.2-201ENST00000607376 223 ntBASIC17.15■□□□□ 0.34
COL20A1Q9P218 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 AL133338.1-201ENST00000565695 1517 ntBASIC17.15■□□□□ 0.34
COL20A1Q9P218 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
COL20A1Q9P218 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL20A1Q9P218 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.14■□□□□ 0.34
COL20A1Q9P218 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.14■□□□□ 0.34
COL20A1Q9P218 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.14■□□□□ 0.34
COL20A1Q9P218 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.14■□□□□ 0.34
COL20A1Q9P218 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL20A1Q9P218 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 AC138035.3-201ENST00000622706 2791 ntBASIC17.14■□□□□ 0.33
COL20A1Q9P218 AC023090.2-201ENST00000625182 2110 ntBASIC17.14■□□□□ 0.33
COL20A1Q9P218 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.14■□□□□ 0.33
COL20A1Q9P218 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
COL20A1Q9P218 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 AL136309.1-201ENST00000403917 691 ntBASIC17.14■□□□□ 0.33
COL20A1Q9P218 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL20A1Q9P218 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.14■□□□□ 0.33
COL20A1Q9P218 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.14■□□□□ 0.33
COL20A1Q9P218 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 AL358472.3-201ENST00000608147 415 ntBASIC17.14■□□□□ 0.33
COL20A1Q9P218 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.14■□□□□ 0.33
COL20A1Q9P218 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.14■□□□□ 0.33
COL20A1Q9P218 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL20A1Q9P218 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms