Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.36□□□□□ -0.11
CDH12P55289 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.36□□□□□ -0.11
CDH12P55289 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
CDH12P55289 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 LINC01230-201ENST00000625222 3017 ntBASIC14.36□□□□□ -0.11
CDH12P55289 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.35□□□□□ -0.11
CDH12P55289 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CDH12P55289 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CDH12P55289 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.35□□□□□ -0.11
CDH12P55289 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.35□□□□□ -0.11
CDH12P55289 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.35□□□□□ -0.11
CDH12P55289 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.35□□□□□ -0.11
CDH12P55289 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
CDH12P55289 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 CICP4-201ENST00000447359 2812 ntBASIC14.35□□□□□ -0.11
CDH12P55289 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CDH12P55289 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CDH12P55289 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH12P55289 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
CDH12P55289 AP000845.1-201ENST00000581677 2131 ntBASIC14.35□□□□□ -0.11
CDH12P55289 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
CDH12P55289 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH12P55289 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms