Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 FGD5P1-202ENST00000614866 2498 ntBASIC15.9■□□□□ 0.14
PTPN9P43378 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.9■□□□□ 0.14
PTPN9P43378 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.9■□□□□ 0.14
PTPN9P43378 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.9■□□□□ 0.14
PTPN9P43378 MIR3197-201ENST00000582241 73 ntBASIC15.9■□□□□ 0.14
PTPN9P43378 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.9■□□□□ 0.14
PTPN9P43378 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
PTPN9P43378 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
PTPN9P43378 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
PTPN9P43378 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN9P43378 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.14
PTPN9P43378 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.89■□□□□ 0.13
PTPN9P43378 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 KLF2P2-201ENST00000416807 1039 ntBASIC15.89■□□□□ 0.13
PTPN9P43378 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.89■□□□□ 0.13
PTPN9P43378 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 DUX4L47-201ENST00000566374 394 ntBASIC15.89■□□□□ 0.13
PTPN9P43378 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 AC027307.3-201ENST00000594262 1100 ntBASIC15.89■□□□□ 0.13
PTPN9P43378 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 AC025048.6-201ENST00000634326 1161 ntBASIC15.89■□□□□ 0.13
PTPN9P43378 AL603764.1-201ENST00000636452 321 ntBASIC15.89■□□□□ 0.13
PTPN9P43378 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN9P43378 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN9P43378 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN9P43378 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms