Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.94□□□□□ -0.02
HNF4AP41235 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.94□□□□□ -0.02
HNF4AP41235 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.94□□□□□ -0.02
HNF4AP41235 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.94□□□□□ -0.02
HNF4AP41235 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
HNF4AP41235 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.94□□□□□ -0.02
HNF4AP41235 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HNF4AP41235 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.94□□□□□ -0.02
HNF4AP41235 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.94□□□□□ -0.02
HNF4AP41235 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.93□□□□□ -0.02
HNF4AP41235 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
HNF4AP41235 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.93□□□□□ -0.02
HNF4AP41235 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
HNF4AP41235 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
HNF4AP41235 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.93□□□□□ -0.02
HNF4AP41235 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.93□□□□□ -0.02
HNF4AP41235 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.93□□□□□ -0.02
HNF4AP41235 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 MEIS3P1-201ENST00000495167 958 ntBASIC14.93□□□□□ -0.02
HNF4AP41235 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.93□□□□□ -0.02
HNF4AP41235 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.93□□□□□ -0.02
HNF4AP41235 MIR4745-201ENST00000577608 62 ntBASIC14.93□□□□□ -0.02
HNF4AP41235 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.93□□□□□ -0.02
HNF4AP41235 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.93□□□□□ -0.02
HNF4AP41235 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HNF4AP41235 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.93□□□□□ -0.02
HNF4AP41235 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.93□□□□□ -0.02
HNF4AP41235 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.93□□□□□ -0.02
HNF4AP41235 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.93□□□□□ -0.02
HNF4AP41235 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HNF4AP41235 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HNF4AP41235 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.92□□□□□ -0.02
HNF4AP41235 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HNF4AP41235 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.92□□□□□ -0.02
HNF4AP41235 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 AC104457.1-201ENST00000401024 814 ntBASIC14.92□□□□□ -0.02
HNF4AP41235 AC236430.1-201ENST00000402231 743 ntBASIC14.92□□□□□ -0.02
HNF4AP41235 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.92□□□□□ -0.02
HNF4AP41235 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 TPRX2P-201ENST00000535362 881 ntBASIC14.92□□□□□ -0.02
HNF4AP41235 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.92□□□□□ -0.02
HNF4AP41235 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 LINC02560-201ENST00000596379 459 ntBASIC14.92□□□□□ -0.02
HNF4AP41235 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.92□□□□□ -0.02
HNF4AP41235 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.92□□□□□ -0.02
HNF4AP41235 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.92□□□□□ -0.02
HNF4AP41235 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.92□□□□□ -0.02
HNF4AP41235 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HNF4AP41235 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms