Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 AL133267.1-201ENST00000398220 340 ntBASIC13.67□□□□□ -0.22
SGCEO43556 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.67□□□□□ -0.22
SGCEO43556 AC055876.3-201ENST00000431496 288 ntBASIC13.67□□□□□ -0.22
SGCEO43556 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.67□□□□□ -0.22
SGCEO43556 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.67□□□□□ -0.22
SGCEO43556 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.67□□□□□ -0.22
SGCEO43556 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC13.67□□□□□ -0.22
SGCEO43556 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.67□□□□□ -0.22
SGCEO43556 AC015910.1-201ENST00000579400 975 ntBASIC13.67□□□□□ -0.22
SGCEO43556 AC138649.4-201ENST00000612222 287 ntBASIC13.67□□□□□ -0.22
SGCEO43556 AC126365.1-201ENST00000578585 1514 ntBASIC13.67□□□□□ -0.22
SGCEO43556 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 AC005252.3-201ENST00000623855 2258 ntBASIC13.67□□□□□ -0.22
SGCEO43556 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 AC023908.3-201ENST00000564211 3047 ntBASIC13.67□□□□□ -0.22
SGCEO43556 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SGCEO43556 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.67□□□□□ -0.22
SGCEO43556 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SGCEO43556 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.66□□□□□ -0.22
SGCEO43556 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SGCEO43556 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.66□□□□□ -0.22
SGCEO43556 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
SGCEO43556 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.66□□□□□ -0.22
SGCEO43556 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SGCEO43556 AC148477.4-201ENST00000613430 1793 ntBASIC13.66□□□□□ -0.22
SGCEO43556 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
SGCEO43556 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
SGCEO43556 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
SGCEO43556 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.66□□□□□ -0.22
SGCEO43556 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.66□□□□□ -0.22
SGCEO43556 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SGCEO43556 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.66□□□□□ -0.22
SGCEO43556 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.66□□□□□ -0.22
SGCEO43556 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.66□□□□□ -0.22
SGCEO43556 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.66□□□□□ -0.22
SGCEO43556 AC092183.1-201ENST00000469884 875 ntBASIC13.66□□□□□ -0.22
SGCEO43556 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.66□□□□□ -0.22
SGCEO43556 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.66□□□□□ -0.22
SGCEO43556 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SGCEO43556 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 TIMM17BP1-201ENST00000545713 516 ntBASIC13.66□□□□□ -0.22
SGCEO43556 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.66□□□□□ -0.22
SGCEO43556 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.66□□□□□ -0.22
SGCEO43556 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SGCEO43556 KRT8P44-201ENST00000441609 1350 ntBASIC13.66□□□□□ -0.22
SGCEO43556 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms