Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 AC211429.1-201ENST00000415277 523 ntBASIC12.42□□□□□ -0.42
HMGB3O15347 DUSP5P1-201ENST00000441325 1139 ntBASIC12.42□□□□□ -0.42
HMGB3O15347 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.42□□□□□ -0.42
HMGB3O15347 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC12.42□□□□□ -0.42
HMGB3O15347 CYGB-205ENST00000590175 830 ntTSL 3 BASIC12.42□□□□□ -0.42
HMGB3O15347 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 PKP1-201ENST00000263946 5447 ntTSL 5 BASIC12.42□□□□□ -0.42
HMGB3O15347 COL19A1-205ENST00000620364 6233 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HMGB3O15347 CXorf38-203ENST00000378426 4895 ntTSL 2 BASIC12.42□□□□□ -0.42
HMGB3O15347 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 PAX6-245ENST00000638914 7300 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
HMGB3O15347 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.41□□□□□ -0.42
HMGB3O15347 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 HMGA1P7-201ENST00000406908 502 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 PCED1CP-201ENST00000419887 785 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HMGB3O15347 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC12.41□□□□□ -0.42
HMGB3O15347 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC12.41□□□□□ -0.42
HMGB3O15347 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC12.41□□□□□ -0.42
HMGB3O15347 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.41□□□□□ -0.42
HMGB3O15347 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 MIR4313-201ENST00000580760 101 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 MIR4515-201ENST00000584082 81 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 MIR4321-201ENST00000592276 80 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 AC092119.3-201ENST00000612618 583 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC12.41□□□□□ -0.42
HMGB3O15347 BCL10-202ENST00000620248 774 ntTSL 5 BASIC12.41□□□□□ -0.42
HMGB3O15347 RNF130-207ENST00000522208 9945 ntTSL 5 BASIC12.41□□□□□ -0.42
HMGB3O15347 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
HMGB3O15347 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HMGB3O15347 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 UBE3B-203ENST00000434735 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.41□□□□□ -0.42
HMGB3O15347 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
HMGB3O15347 PAN3-AS1-201ENST00000563843 1351 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HMGB3O15347 BX640514.1-201ENST00000583223 1918 ntBASIC12.41□□□□□ -0.42
HMGB3O15347 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms