Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
CX3CL1P78423 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.45□□□□□ -0.42
CX3CL1P78423 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 AC015922.1-201ENST00000421102 1152 ntBASIC12.45□□□□□ -0.42
CX3CL1P78423 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.45□□□□□ -0.42
CX3CL1P78423 KRT18P64-201ENST00000434946 1219 ntBASIC12.45□□□□□ -0.42
CX3CL1P78423 AC114501.2-201ENST00000439631 535 ntBASIC12.45□□□□□ -0.42
CX3CL1P78423 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.45□□□□□ -0.42
CX3CL1P78423 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.45□□□□□ -0.42
CX3CL1P78423 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.45□□□□□ -0.42
CX3CL1P78423 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.45□□□□□ -0.42
CX3CL1P78423 AC004461.2-201ENST00000629517 803 ntBASIC12.45□□□□□ -0.42
CX3CL1P78423 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
CX3CL1P78423 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
CX3CL1P78423 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.44□□□□□ -0.42
CX3CL1P78423 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 MIR770-201ENST00000390219 98 ntBASIC12.44□□□□□ -0.42
CX3CL1P78423 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
CX3CL1P78423 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.44□□□□□ -0.42
CX3CL1P78423 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CL1P78423 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 AQP6-203ENST00000551733 849 ntTSL 3 BASIC12.44□□□□□ -0.42
CX3CL1P78423 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
CX3CL1P78423 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.44□□□□□ -0.42
CX3CL1P78423 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
CX3CL1P78423 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.44□□□□□ -0.42
CX3CL1P78423 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CX3CL1P78423 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CX3CL1P78423 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CX3CL1P78423 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CX3CL1P78423 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms