Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 AC109322.1-201ENST00000524499 1264 ntBASIC14.83□□□□□ -0.04
SLC28A1O00337 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.83□□□□□ -0.04
SLC28A1O00337 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.83□□□□□ -0.04
SLC28A1O00337 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
SLC28A1O00337 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 AL596442.2-201ENST00000610240 980 ntBASIC14.83□□□□□ -0.04
SLC28A1O00337 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.04
SLC28A1O00337 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.83□□□□□ -0.04
SLC28A1O00337 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.83□□□□□ -0.04
SLC28A1O00337 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.83□□□□□ -0.04
SLC28A1O00337 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
SLC28A1O00337 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.82□□□□□ -0.04
SLC28A1O00337 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SLC28A1O00337 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SLC28A1O00337 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
SLC28A1O00337 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.82□□□□□ -0.04
SLC28A1O00337 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.82□□□□□ -0.04
SLC28A1O00337 AC004967.1-201ENST00000453589 447 ntBASIC14.82□□□□□ -0.04
SLC28A1O00337 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.82□□□□□ -0.04
SLC28A1O00337 AC069120.2-201ENST00000524091 540 ntBASIC14.82□□□□□ -0.04
SLC28A1O00337 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.82□□□□□ -0.04
SLC28A1O00337 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.82□□□□□ -0.04
SLC28A1O00337 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.82□□□□□ -0.04
SLC28A1O00337 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.82□□□□□ -0.04
SLC28A1O00337 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.82□□□□□ -0.04
SLC28A1O00337 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.82□□□□□ -0.04
SLC28A1O00337 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SLC28A1O00337 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 AC007191.1-201ENST00000623179 2995 ntBASIC14.82□□□□□ -0.04
SLC28A1O00337 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SLC28A1O00337 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.82□□□□□ -0.04
SLC28A1O00337 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
SLC28A1O00337 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
SLC28A1O00337 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SLC28A1O00337 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SLC28A1O00337 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.81□□□□□ -0.04
SLC28A1O00337 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SLC28A1O00337 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SLC28A1O00337 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.81□□□□□ -0.04
SLC28A1O00337 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SLC28A1O00337 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SLC28A1O00337 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SLC28A1O00337 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SLC28A1O00337 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SLC28A1O00337 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
SLC28A1O00337 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms