Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AL049597.2-201ENST00000565575 961 ntBASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AC093458.2-201ENST00000623150 629 ntBASIC11.3□□□□□ -0.6
SMKR1H3BMG3 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AMT-224ENST00000635808 1610 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 AP000845.1-201ENST00000581677 2131 ntBASIC11.3□□□□□ -0.6
SMKR1H3BMG3 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AC004987.2-201ENST00000395959 1148 ntBASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AC092474.2-201ENST00000424288 719 ntBASIC11.29□□□□□ -0.6
SMKR1H3BMG3 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 REXO1L6P-202ENST00000619970 1078 ntBASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AC004899.2-201ENST00000622993 3860 ntBASIC11.29□□□□□ -0.6
SMKR1H3BMG3 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
SMKR1H3BMG3 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms