Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 RFPL4AP1-201ENST00000530883 850 ntBASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 AL589739.1-201ENST00000607720 493 ntBASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 AF228730.6-201ENST00000641497 218 ntBASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 AC084121.3-201ENST00000641716 218 ntBASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
TRIM56Q9BRZ2 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 AL035456.1-201ENST00000456064 1369 ntBASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 FGD5P1-202ENST00000614866 2498 ntBASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 SPDYE12P-201ENST00000618416 771 ntBASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 AC013726.1-201ENST00000563747 2285 ntBASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM56Q9BRZ2 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM56Q9BRZ2 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms