Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 TTTY23B-201ENST00000442790 549 ntBASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 RPL13AP25-201ENST00000484130 612 ntBASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 AL109954.1-202ENST00000564051 2148 ntBASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFWD3Q6PCD5 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 DRD5P1-201ENST00000456605 1438 ntBASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 C1QBPP1-201ENST00000400117 770 ntBASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 U91328.1-201ENST00000437528 223 ntBASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 AC010319.3-201ENST00000597028 470 ntBASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFWD3Q6PCD5 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
RFWD3Q6PCD5 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms