Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCNA1P78396 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.32■□□□□ 0.36
CCNA1P78396 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.32■□□□□ 0.36
CCNA1P78396 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17.32■□□□□ 0.36
CCNA1P78396 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.32■□□□□ 0.36
CCNA1P78396 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.32■□□□□ 0.36
CCNA1P78396 AC024681.1-201ENST00000521917 487 ntBASIC17.32■□□□□ 0.36
CCNA1P78396 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC17.32■□□□□ 0.36
CCNA1P78396 FGFR3P5-201ENST00000564496 886 ntBASIC17.32■□□□□ 0.36
CCNA1P78396 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC17.32■□□□□ 0.36
CCNA1P78396 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.32■□□□□ 0.36
CCNA1P78396 AC004466.1-201ENST00000599515 1080 ntBASIC17.32■□□□□ 0.36
CCNA1P78396 AL805961.1-203ENST00000641078 1258 ntBASIC17.32■□□□□ 0.36
CCNA1P78396 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCNA1P78396 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.32■□□□□ 0.36
CCNA1P78396 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.32■□□□□ 0.36
CCNA1P78396 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.32■□□□□ 0.36
CCNA1P78396 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCNA1P78396 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCNA1P78396 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.31■□□□□ 0.36
CCNA1P78396 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCNA1P78396 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.31■□□□□ 0.36
CCNA1P78396 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 AC004899.1-201ENST00000424687 1714 ntBASIC17.31■□□□□ 0.36
CCNA1P78396 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CCNA1P78396 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.31■□□□□ 0.36
CCNA1P78396 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.31■□□□□ 0.36
CCNA1P78396 AC026434.2-201ENST00000506094 1078 ntBASIC17.31■□□□□ 0.36
CCNA1P78396 AL161670.2-201ENST00000557650 1227 ntBASIC17.31■□□□□ 0.36
CCNA1P78396 AC100827.2-201ENST00000563214 1194 ntBASIC17.31■□□□□ 0.36
CCNA1P78396 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.31■□□□□ 0.36
CCNA1P78396 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.31■□□□□ 0.36
CCNA1P78396 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.31■□□□□ 0.36
CCNA1P78396 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CCNA1P78396 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.31■□□□□ 0.36
CCNA1P78396 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.31■□□□□ 0.36
CCNA1P78396 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCNA1P78396 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.3■□□□□ 0.36
CCNA1P78396 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.3■□□□□ 0.36
CCNA1P78396 AC008132.1-202ENST00000342005 1389 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCNA1P78396 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCNA1P78396 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.3■□□□□ 0.36
CCNA1P78396 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 NPPA-201ENST00000376476 728 ntTSL 3 BASIC17.3■□□□□ 0.36
CCNA1P78396 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCNA1P78396 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.3■□□□□ 0.36
CCNA1P78396 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.3■□□□□ 0.36
CCNA1P78396 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.3■□□□□ 0.36
CCNA1P78396 FTLP1-201ENST00000449155 526 ntBASIC17.3■□□□□ 0.36
CCNA1P78396 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC17.3■□□□□ 0.36
CCNA1P78396 AC134698.3-201ENST00000523880 214 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms