Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
CLRN1P58418 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CLRN1P58418 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.78□□□□□ -0.2
CLRN1P58418 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
CLRN1P58418 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.78□□□□□ -0.2
CLRN1P58418 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.78□□□□□ -0.2
CLRN1P58418 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 HNRNPA1P40-201ENST00000426371 1278 ntBASIC13.78□□□□□ -0.2
CLRN1P58418 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.78□□□□□ -0.2
CLRN1P58418 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 DUT-210ENST00000559935 569 ntTSL 3 BASIC13.78□□□□□ -0.2
CLRN1P58418 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13.78□□□□□ -0.2
CLRN1P58418 AC008738.7-201ENST00000609744 511 ntBASIC13.78□□□□□ -0.2
CLRN1P58418 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.78□□□□□ -0.2
CLRN1P58418 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.78□□□□□ -0.2
CLRN1P58418 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 WASH3P-207ENST00000560956 1394 ntBASIC13.78□□□□□ -0.2
CLRN1P58418 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.78□□□□□ -0.2
CLRN1P58418 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.78□□□□□ -0.2
CLRN1P58418 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 AGAP7P-201ENST00000582299 2062 ntBASIC13.78□□□□□ -0.2
CLRN1P58418 AGAP14-201ENST00000624701 2060 ntBASIC13.78□□□□□ -0.2
CLRN1P58418 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CLRN1P58418 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.78□□□□□ -0.2
CLRN1P58418 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CLRN1P58418 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CLRN1P58418 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.77□□□□□ -0.2
CLRN1P58418 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.77□□□□□ -0.2
CLRN1P58418 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CLRN1P58418 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.2
CLRN1P58418 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CLRN1P58418 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
CLRN1P58418 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
CLRN1P58418 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CLRN1P58418 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
CLRN1P58418 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CLRN1P58418 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.77□□□□□ -0.21
CLRN1P58418 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.77□□□□□ -0.21
CLRN1P58418 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC13.77□□□□□ -0.21
CLRN1P58418 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.77□□□□□ -0.21
CLRN1P58418 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.77□□□□□ -0.21
CLRN1P58418 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.77□□□□□ -0.21
CLRN1P58418 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CLRN1P58418 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms