Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.59□□□□□ -0.07
LIM2P55344 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.59□□□□□ -0.07
LIM2P55344 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.59□□□□□ -0.07
LIM2P55344 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
LIM2P55344 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 GHSR-202ENST00000427970 912 ntBASIC14.59□□□□□ -0.07
LIM2P55344 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.59□□□□□ -0.07
LIM2P55344 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.59□□□□□ -0.07
LIM2P55344 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.59□□□□□ -0.07
LIM2P55344 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.59□□□□□ -0.07
LIM2P55344 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.59□□□□□ -0.07
LIM2P55344 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.59□□□□□ -0.07
LIM2P55344 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.59□□□□□ -0.07
LIM2P55344 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 AC120045.2-201ENST00000567334 178 ntBASIC14.59□□□□□ -0.07
LIM2P55344 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.59□□□□□ -0.07
LIM2P55344 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.59□□□□□ -0.07
LIM2P55344 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.59□□□□□ -0.07
LIM2P55344 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
LIM2P55344 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
LIM2P55344 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
LIM2P55344 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.59□□□□□ -0.07
LIM2P55344 LINC01101-201ENST00000622953 1884 ntBASIC14.59□□□□□ -0.07
LIM2P55344 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LIM2P55344 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.58□□□□□ -0.07
LIM2P55344 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 AL009178.2-201ENST00000597278 2719 ntBASIC14.58□□□□□ -0.07
LIM2P55344 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
LIM2P55344 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LIM2P55344 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
LIM2P55344 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.58□□□□□ -0.08
LIM2P55344 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LIM2P55344 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.58□□□□□ -0.08
LIM2P55344 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LIM2P55344 DGCR5-201ENST00000399539 862 ntBASIC14.58□□□□□ -0.08
LIM2P55344 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
LIM2P55344 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.58□□□□□ -0.08
LIM2P55344 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.58□□□□□ -0.08
LIM2P55344 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.58□□□□□ -0.08
LIM2P55344 AL359711.2-201ENST00000563105 872 ntBASIC14.58□□□□□ -0.08
LIM2P55344 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
LIM2P55344 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.58□□□□□ -0.08
LIM2P55344 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.58□□□□□ -0.08
LIM2P55344 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LIM2P55344 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.58□□□□□ -0.08
LIM2P55344 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
LIM2P55344 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.58□□□□□ -0.08
LIM2P55344 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
LIM2P55344 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LIM2P55344 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.57□□□□□ -0.08
LIM2P55344 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.57□□□□□ -0.08
LIM2P55344 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LIM2P55344 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
LIM2P55344 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 376 ms