Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC9P31274 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC9P31274 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC20.07■□□□□ 0.8
HOXC9P31274 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HOXC9P31274 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.06■□□□□ 0.8
HOXC9P31274 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC9P31274 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 HINT2P1-201ENST00000419438 481 ntBASIC20.06■□□□□ 0.8
HOXC9P31274 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC9P31274 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC20.06■□□□□ 0.8
HOXC9P31274 Z97180.1-201ENST00000445173 988 ntBASIC20.06■□□□□ 0.8
HOXC9P31274 KLF2P1-201ENST00000447438 1042 ntBASIC20.06■□□□□ 0.8
HOXC9P31274 RPL18P13-201ENST00000478088 569 ntBASIC20.06■□□□□ 0.8
HOXC9P31274 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 AC134698.3-201ENST00000523880 214 ntBASIC20.06■□□□□ 0.8
HOXC9P31274 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC20.06■□□□□ 0.8
HOXC9P31274 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC20.06■□□□□ 0.8
HOXC9P31274 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 AL805961.1-203ENST00000641078 1258 ntBASIC20.06■□□□□ 0.8
HOXC9P31274 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC9P31274 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HOXC9P31274 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC9P31274 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC20.06■□□□□ 0.8
HOXC9P31274 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC9P31274 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HOXC9P31274 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC9P31274 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC9P31274 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC9P31274 AC125604.1-201ENST00000496255 707 ntBASIC20.05■□□□□ 0.8
HOXC9P31274 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC9P31274 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.05■□□□□ 0.8
HOXC9P31274 AC132192.2-201ENST00000596206 1147 ntBASIC20.05■□□□□ 0.8
HOXC9P31274 AL133499.1-201ENST00000596207 608 ntBASIC20.05■□□□□ 0.8
HOXC9P31274 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
HOXC9P31274 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HOXC9P31274 AC079336.7-201ENST00000623428 1078 ntBASIC20.05■□□□□ 0.8
HOXC9P31274 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC9P31274 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC9P31274 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HOXC9P31274 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC9P31274 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 STRN-202ENST00000379213 2254 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC9P31274 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
HOXC9P31274 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 RBM38-204ENST00000371219 760 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC9P31274 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 SERF2-209ENST00000409646 559 ntTSL 4 BASIC20.04■□□□□ 0.8
HOXC9P31274 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC9P31274 VDAC1P1-201ENST00000439229 848 ntBASIC20.04■□□□□ 0.8
HOXC9P31274 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC9P31274 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC9P31274 AC012618.1-201ENST00000461223 412 ntBASIC20.04■□□□□ 0.8
HOXC9P31274 SUPT4H1P2-201ENST00000501248 353 ntBASIC20.04■□□□□ 0.8
HOXC9P31274 AL161670.2-201ENST00000557650 1227 ntBASIC20.04■□□□□ 0.8
HOXC9P31274 SNORD3B-2-202ENST00000571722 791 ntBASIC20.04■□□□□ 0.8
HOXC9P31274 AP000845.1-201ENST00000581677 2131 ntBASIC20.04■□□□□ 0.8
HOXC9P31274 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 AC020658.6-201ENST00000623564 1870 ntBASIC20.04■□□□□ 0.8
HOXC9P31274 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC9P31274 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HOXC9P31274 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC9P31274 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms