Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
VIMP08670 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 MST1P2-201ENST00000457982 2291 ntBASIC15.54■□□□□ 0.08
VIMP08670 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.54■□□□□ 0.08
VIMP08670 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 RPL5P21-201ENST00000404620 815 ntBASIC15.54■□□□□ 0.08
VIMP08670 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 CXCL1P1-201ENST00000502804 216 ntBASIC15.54■□□□□ 0.08
VIMP08670 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC15.54■□□□□ 0.08
VIMP08670 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.54■□□□□ 0.08
VIMP08670 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.54■□□□□ 0.08
VIMP08670 AC021087.4-201ENST00000563761 564 ntBASIC15.54■□□□□ 0.08
VIMP08670 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.54■□□□□ 0.08
VIMP08670 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.54■□□□□ 0.08
VIMP08670 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.54■□□□□ 0.08
VIMP08670 AC011474.4-201ENST00000623523 2076 ntBASIC15.54■□□□□ 0.08
VIMP08670 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.54■□□□□ 0.08
VIMP08670 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC15.54■□□□□ 0.08
VIMP08670 STK40-201ENST00000359297 4837 ntTSL 2 BASIC15.54■□□□□ 0.08
VIMP08670 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
VIMP08670 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 AC004987.2-201ENST00000395959 1148 ntBASIC15.53■□□□□ 0.08
VIMP08670 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.53■□□□□ 0.08
VIMP08670 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.53■□□□□ 0.08
VIMP08670 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 FOSL1P1-201ENST00000511041 816 ntBASIC15.53■□□□□ 0.08
VIMP08670 PRYP6-201ENST00000514804 343 ntBASIC15.53■□□□□ 0.08
VIMP08670 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.53■□□□□ 0.08
VIMP08670 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 AC092119.3-201ENST00000612618 583 ntBASIC15.53■□□□□ 0.08
VIMP08670 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 AL358472.4-201ENST00000633140 710 ntBASIC15.53■□□□□ 0.08
VIMP08670 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
VIMP08670 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VIMP08670 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.53■□□□□ 0.08
VIMP08670 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.53■□□□□ 0.08
VIMP08670 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.52■□□□□ 0.08
VIMP08670 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.52■□□□□ 0.08
VIMP08670 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms