Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AL135744.1-201ENST00000565098 629 ntBASIC14.39□□□□□ -0.11
RFX4Q33E94 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.39□□□□□ -0.11
RFX4Q33E94 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.39□□□□□ -0.11
RFX4Q33E94 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.39□□□□□ -0.11
RFX4Q33E94 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX4Q33E94 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 LINC01230-201ENST00000625222 3017 ntBASIC14.39□□□□□ -0.11
RFX4Q33E94 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
RFX4Q33E94 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RFX4Q33E94 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
RFX4Q33E94 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX4Q33E94 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX4Q33E94 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX4Q33E94 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX4Q33E94 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
RFX4Q33E94 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.38□□□□□ -0.11
RFX4Q33E94 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
RFX4Q33E94 FAM220BP-201ENST00000377689 816 ntBASIC14.38□□□□□ -0.11
RFX4Q33E94 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.38□□□□□ -0.11
RFX4Q33E94 AL355306.1-201ENST00000415580 579 ntBASIC14.38□□□□□ -0.11
RFX4Q33E94 AL591424.1-201ENST00000442569 1213 ntBASIC14.38□□□□□ -0.11
RFX4Q33E94 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 RNA5SP410-201ENST00000516285 106 ntBASIC14.38□□□□□ -0.11
RFX4Q33E94 FAM86C2P-203ENST00000528684 1004 ntBASIC14.38□□□□□ -0.11
RFX4Q33E94 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
RFX4Q33E94 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.38□□□□□ -0.11
RFX4Q33E94 AL928921.2-201ENST00000641325 2442 ntBASIC14.38□□□□□ -0.11
RFX4Q33E94 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 AL136982.4-201ENST00000437689 1740 ntBASIC14.38□□□□□ -0.11
RFX4Q33E94 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.38□□□□□ -0.11
RFX4Q33E94 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RFX4Q33E94 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.38□□□□□ -0.11
RFX4Q33E94 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RFX4Q33E94 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
RFX4Q33E94 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 MTHFR-210ENST00000641407 2387 ntBASIC14.37□□□□□ -0.11
RFX4Q33E94 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms