Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGCS2P54868 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HMGCS2P54868 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC17.58■□□□□ 0.41
HMGCS2P54868 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGCS2P54868 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HMGCS2P54868 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGCS2P54868 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 Z97180.1-201ENST00000445173 988 ntBASIC17.58■□□□□ 0.4
HMGCS2P54868 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGCS2P54868 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.58■□□□□ 0.4
HMGCS2P54868 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGCS2P54868 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGCS2P54868 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGCS2P54868 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGCS2P54868 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGCS2P54868 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 AP000593.2-201ENST00000542775 1433 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGCS2P54868 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGCS2P54868 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 AL360270.3-201ENST00000609118 1348 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGCS2P54868 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 HLA-DQB2-229ENST00000411527 1059 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 ACTG1P2-201ENST00000415776 1125 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 ACTG1P11-201ENST00000425411 1125 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.57■□□□□ 0.4
HMGCS2P54868 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC17.57■□□□□ 0.4
HMGCS2P54868 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 OARD1-204ENST00000464633 717 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGCS2P54868 AC013355.1-201ENST00000562625 723 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 FGFR3P5-201ENST00000564496 886 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 BNIP3P13-201ENST00000599968 566 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
HMGCS2P54868 AL358472.3-201ENST00000608147 415 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HMGCS2P54868 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGCS2P54868 PRORSD1P-202ENST00000563365 2154 ntBASIC17.57■□□□□ 0.4
HMGCS2P54868 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGCS2P54868 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGCS2P54868 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 AC008132.1-202ENST00000342005 1389 ntBASIC17.56■□□□□ 0.4
HMGCS2P54868 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGCS2P54868 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGCS2P54868 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGCS2P54868 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 AL008707.1-201ENST00000422498 534 ntBASIC17.56■□□□□ 0.4
HMGCS2P54868 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGCS2P54868 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGCS2P54868 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGCS2P54868 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGCS2P54868 AC104073.2-201ENST00000453737 312 ntBASIC17.56■□□□□ 0.4
HMGCS2P54868 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.56■□□□□ 0.4
HMGCS2P54868 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC17.56■□□□□ 0.4
HMGCS2P54868 AC106794.1-201ENST00000506935 792 ntBASIC17.56■□□□□ 0.4
HMGCS2P54868 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.56■□□□□ 0.4
HMGCS2P54868 MIR4783-201ENST00000580343 82 ntBASIC17.56■□□□□ 0.4
HMGCS2P54868 AC026740.1-201ENST00000607068 791 ntBASIC17.56■□□□□ 0.4
HMGCS2P54868 AL136301.1-201ENST00000615830 422 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms