Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HTTP42858 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HTTP42858 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HTTP42858 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
HTTP42858 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HTTP42858 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.78■□□□□ 0.28
HTTP42858 AL157407.1-201ENST00000435784 904 ntBASIC16.78■□□□□ 0.28
HTTP42858 AL645933.1-201ENST00000440087 609 ntBASIC16.78■□□□□ 0.28
HTTP42858 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC16.78■□□□□ 0.28
HTTP42858 AC011471.3-201ENST00000623576 402 ntBASIC16.78■□□□□ 0.28
HTTP42858 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HTTP42858 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HTTP42858 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HTTP42858 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.78■□□□□ 0.28
HTTP42858 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.78■□□□□ 0.28
HTTP42858 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 KRT18P36-201ENST00000411618 1276 ntBASIC16.77■□□□□ 0.28
HTTP42858 BANF1P3-201ENST00000412556 261 ntBASIC16.77■□□□□ 0.28
HTTP42858 AL807761.2-201ENST00000422849 729 ntBASIC16.77■□□□□ 0.28
HTTP42858 AC092638.2-201ENST00000441105 947 ntBASIC16.77■□□□□ 0.28
HTTP42858 AC093826.1-201ENST00000508655 993 ntBASIC16.77■□□□□ 0.28
HTTP42858 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.77■□□□□ 0.28
HTTP42858 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 AC093752.3-201ENST00000567343 901 ntBASIC16.77■□□□□ 0.28
HTTP42858 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC16.77■□□□□ 0.28
HTTP42858 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HTTP42858 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HTTP42858 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.77■□□□□ 0.28
HTTP42858 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HTTP42858 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HTTP42858 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.77■□□□□ 0.27
HTTP42858 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC16.77■□□□□ 0.27
HTTP42858 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.77■□□□□ 0.27
HTTP42858 AP003398.1-201ENST00000531124 318 ntBASIC16.77■□□□□ 0.27
HTTP42858 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC16.77■□□□□ 0.27
HTTP42858 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HTTP42858 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC16.77■□□□□ 0.27
HTTP42858 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC16.77■□□□□ 0.27
HTTP42858 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HTTP42858 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.77■□□□□ 0.27
HTTP42858 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HTTP42858 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
HTTP42858 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC16.77■□□□□ 0.27
HTTP42858 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HTTP42858 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC16.77■□□□□ 0.27
HTTP42858 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HTTP42858 RPSAP15-201ENST00000448168 861 ntBASIC16.76■□□□□ 0.27
HTTP42858 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.76■□□□□ 0.27
HTTP42858 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.76■□□□□ 0.27
HTTP42858 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC16.76■□□□□ 0.27
HTTP42858 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.76■□□□□ 0.27
HTTP42858 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HTTP42858 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16.76■□□□□ 0.27
HTTP42858 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HTTP42858 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.76■□□□□ 0.27
HTTP42858 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 AC011270.2-201ENST00000624293 2550 ntBASIC16.76■□□□□ 0.27
HTTP42858 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC16.76■□□□□ 0.27
HTTP42858 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.76■□□□□ 0.27
HTTP42858 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC16.76■□□□□ 0.27
HTTP42858 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 GDNF-207ENST00000515058 764 ntTSL 5 BASIC16.76■□□□□ 0.27
HTTP42858 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.76■□□□□ 0.27
HTTP42858 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HTTP42858 AL138725.1-201ENST00000407347 1314 ntBASIC16.76■□□□□ 0.27
HTTP42858 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.76■□□□□ 0.27
HTTP42858 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 PRAL-201ENST00000624952 3286 ntBASIC16.76■□□□□ 0.27
HTTP42858 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 HNRNPA1P58-201ENST00000403629 610 ntBASIC16.76■□□□□ 0.27
HTTP42858 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HTTP42858 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.76■□□□□ 0.27
HTTP42858 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HTTP42858 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.75■□□□□ 0.27
HTTP42858 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HTTP42858 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms