Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.17■□□□□ 0.18
APOEP02649 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
APOEP02649 C8orf49-201ENST00000525043 1968 ntBASIC16.17■□□□□ 0.18
APOEP02649 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
APOEP02649 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 DGCR5-201ENST00000399539 862 ntBASIC16.17■□□□□ 0.18
APOEP02649 AL442647.2-201ENST00000429864 857 ntBASIC16.17■□□□□ 0.18
APOEP02649 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
APOEP02649 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 ELK1P1-201ENST00000485699 580 ntBASIC16.17■□□□□ 0.18
APOEP02649 AC092552.1-201ENST00000547243 906 ntBASIC16.17■□□□□ 0.18
APOEP02649 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 MIR8072-201ENST00000614241 80 ntBASIC16.17■□□□□ 0.18
APOEP02649 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.17■□□□□ 0.18
APOEP02649 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.17■□□□□ 0.18
APOEP02649 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.17■□□□□ 0.18
APOEP02649 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
APOEP02649 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOEP02649 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
APOEP02649 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.16■□□□□ 0.18
APOEP02649 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 AP005018.1-201ENST00000525475 301 ntBASIC16.16■□□□□ 0.18
APOEP02649 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
APOEP02649 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.16■□□□□ 0.18
APOEP02649 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.16■□□□□ 0.18
APOEP02649 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.16■□□□□ 0.18
APOEP02649 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.16■□□□□ 0.18
APOEP02649 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
APOEP02649 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
APOEP02649 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms