Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 GOLGA8VP-201ENST00000559009 1798 ntBASIC11.66□□□□□ -0.54
HLA-DQA1P01909 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
HLA-DQA1P01909 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 RPL5P21-201ENST00000404620 815 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 AC093724.1-201ENST00000448659 1027 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 BET1L-206ENST00000486280 665 ntTSL 3 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 MIR4313-201ENST00000580760 101 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 MIR4321-201ENST00000592276 80 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 AL139424.1-201ENST00000607572 797 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 AL732292.2-201ENST00000609649 430 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 AL121772.3-201ENST00000610840 674 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 CCNC-219ENST00000627680 896 ntTSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 AC105206.1-202ENST00000314927 2368 ntBASIC11.65□□□□□ -0.54
HLA-DQA1P01909 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC11.65□□□□□ -0.54
HLA-DQA1P01909 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 AC015909.5-201ENST00000624336 2266 ntBASIC11.65□□□□□ -0.55
HLA-DQA1P01909 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
HLA-DQA1P01909 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 HADH-202ENST00000403312 1752 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms