Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.07■□□□□ 0.32
HPS3Q969F9 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.07■□□□□ 0.32
HPS3Q969F9 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.07■□□□□ 0.32
HPS3Q969F9 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
HPS3Q969F9 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HPS3Q969F9 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.07■□□□□ 0.32
HPS3Q969F9 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.07■□□□□ 0.32
HPS3Q969F9 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.07■□□□□ 0.32
HPS3Q969F9 GAPDHP40-201ENST00000505218 1006 ntBASIC17.07■□□□□ 0.32
HPS3Q969F9 RN7SL204P-201ENST00000582831 262 ntBASIC17.07■□□□□ 0.32
HPS3Q969F9 CHCHD2P3-201ENST00000603038 451 ntBASIC17.07■□□□□ 0.32
HPS3Q969F9 AJ011932.1-201ENST00000621707 465 ntBASIC17.07■□□□□ 0.32
HPS3Q969F9 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.07■□□□□ 0.32
HPS3Q969F9 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.07■□□□□ 0.32
HPS3Q969F9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HPS3Q969F9 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HPS3Q969F9 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.06■□□□□ 0.32
HPS3Q969F9 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.06■□□□□ 0.32
HPS3Q969F9 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 DRD5P1-201ENST00000456605 1438 ntBASIC17.06■□□□□ 0.32
HPS3Q969F9 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HPS3Q969F9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.06■□□□□ 0.32
HPS3Q969F9 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 AC236430.1-201ENST00000402231 743 ntBASIC17.06■□□□□ 0.32
HPS3Q969F9 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.06■□□□□ 0.32
HPS3Q969F9 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.06■□□□□ 0.32
HPS3Q969F9 VDAC1P7-201ENST00000462417 847 ntBASIC17.06■□□□□ 0.32
HPS3Q969F9 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.06■□□□□ 0.32
HPS3Q969F9 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.06■□□□□ 0.32
HPS3Q969F9 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.06■□□□□ 0.32
HPS3Q969F9 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.06■□□□□ 0.32
HPS3Q969F9 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HPS3Q969F9 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HPS3Q969F9 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HPS3Q969F9 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 SLC7A15P-201ENST00000424028 1363 ntBASIC17.05■□□□□ 0.32
HPS3Q969F9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.05■□□□□ 0.32
HPS3Q969F9 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.05■□□□□ 0.32
HPS3Q969F9 AC036164.1-201ENST00000570544 333 ntBASIC17.05■□□□□ 0.32
HPS3Q969F9 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.05■□□□□ 0.32
HPS3Q969F9 LINC02560-201ENST00000596379 459 ntBASIC17.05■□□□□ 0.32
HPS3Q969F9 AL049840.4-201ENST00000602422 811 ntBASIC17.05■□□□□ 0.32
HPS3Q969F9 AL096865.1-201ENST00000606796 927 ntBASIC17.05■□□□□ 0.32
HPS3Q969F9 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.05■□□□□ 0.32
HPS3Q969F9 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HPS3Q969F9 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HPS3Q969F9 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms