Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AL512361.1-201ENST00000554200 418 ntBASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 AC011467.4-201ENST00000594891 528 ntBASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 SPDYE12P-201ENST00000618416 771 ntBASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 AC126755.1-201ENST00000525846 6405 ntBASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ATG4AQ8WYN0 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 AC025181.2-201ENST00000606994 802 ntBASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ATG4AQ8WYN0 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 AC097359.2-201ENST00000604992 2389 ntBASIC16■□□□□ 0.15
ATG4AQ8WYN0 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 AC015922.1-201ENST00000421102 1152 ntBASIC16■□□□□ 0.15
ATG4AQ8WYN0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 SERBP1P3-201ENST00000459980 809 ntBASIC16■□□□□ 0.15
ATG4AQ8WYN0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ATG4AQ8WYN0 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16■□□□□ 0.15
ATG4AQ8WYN0 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms