Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 BOLA2P3-201ENST00000404566 256 ntBASIC14.36□□□□□ -0.11
BEST3Q8N1M1 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 PTP4A1P2-201ENST00000546033 454 ntBASIC14.36□□□□□ -0.11
BEST3Q8N1M1 SNX29P1-201ENST00000548357 1007 ntBASIC14.36□□□□□ -0.11
BEST3Q8N1M1 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 AC015910.1-201ENST00000579400 975 ntBASIC14.36□□□□□ -0.11
BEST3Q8N1M1 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
BEST3Q8N1M1 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 BCRP2-202ENST00000447763 634 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 BCRP6-201ENST00000510112 632 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 BCRP7-201ENST00000511549 544 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 AC068587.3-201ENST00000526613 355 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 CLUHP6-201ENST00000580789 941 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 AL022328.1-201ENST00000610050 478 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.35□□□□□ -0.11
BEST3Q8N1M1 MIR6775-201ENST00000617557 69 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.35□□□□□ -0.11
BEST3Q8N1M1 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms