Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 AL513477.1-201ENST00000602865 2407 ntBASIC13.54□□□□□ -0.24
TFF3Q07654 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
TFF3Q07654 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.54□□□□□ -0.24
TFF3Q07654 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
TFF3Q07654 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 ACTBP8-201ENST00000403258 1108 ntBASIC13.54□□□□□ -0.24
TFF3Q07654 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.54□□□□□ -0.24
TFF3Q07654 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 BX284668.4-201ENST00000453917 508 ntBASIC13.54□□□□□ -0.24
TFF3Q07654 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.54□□□□□ -0.24
TFF3Q07654 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 SCARNA20.5-201ENST00000516991 142 ntBASIC13.54□□□□□ -0.24
TFF3Q07654 ACTG1P17-201ENST00000558391 1119 ntBASIC13.54□□□□□ -0.24
TFF3Q07654 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.54□□□□□ -0.24
TFF3Q07654 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.54□□□□□ -0.24
TFF3Q07654 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 RETN-203ENST00000629642 400 ntTSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.54□□□□□ -0.24
TFF3Q07654 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 PKD1P5-201ENST00000532415 10291 ntBASIC13.54□□□□□ -0.24
TFF3Q07654 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
TFF3Q07654 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.54□□□□□ -0.24
TFF3Q07654 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
TFF3Q07654 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
TFF3Q07654 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.53□□□□□ -0.24
TFF3Q07654 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
TFF3Q07654 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 MIR648-201ENST00000385046 94 ntBASIC13.53□□□□□ -0.24
TFF3Q07654 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.53□□□□□ -0.24
TFF3Q07654 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.53□□□□□ -0.24
TFF3Q07654 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.53□□□□□ -0.24
TFF3Q07654 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.53□□□□□ -0.24
TFF3Q07654 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
TFF3Q07654 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.53□□□□□ -0.24
TFF3Q07654 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.53□□□□□ -0.24
TFF3Q07654 AC104982.3-201ENST00000581995 514 ntBASIC13.53□□□□□ -0.24
TFF3Q07654 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.53□□□□□ -0.24
TFF3Q07654 AL096828.3-201ENST00000615354 462 ntBASIC13.53□□□□□ -0.24
TFF3Q07654 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
TFF3Q07654 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
TFF3Q07654 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.53□□□□□ -0.24
TFF3Q07654 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.53□□□□□ -0.24
TFF3Q07654 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms