Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC068587.6-202ENST00000641839 5619 ntBASIC14.64□□□□□ -0.07
LIM2P55344 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIM2P55344 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.64□□□□□ -0.07
LIM2P55344 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIM2P55344 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.63□□□□□ -0.07
LIM2P55344 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 FAM45BP-202ENST00000592932 1624 ntBASIC14.63□□□□□ -0.07
LIM2P55344 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
LIM2P55344 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 CRB3P1-201ENST00000449338 276 ntBASIC14.63□□□□□ -0.07
LIM2P55344 VDAC1P7-201ENST00000462417 847 ntBASIC14.63□□□□□ -0.07
LIM2P55344 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.63□□□□□ -0.07
LIM2P55344 GAPDHP40-201ENST00000505218 1006 ntBASIC14.63□□□□□ -0.07
LIM2P55344 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 AC092552.1-201ENST00000547243 906 ntBASIC14.63□□□□□ -0.07
LIM2P55344 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.63□□□□□ -0.07
LIM2P55344 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.63□□□□□ -0.07
LIM2P55344 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 AC008494.3-201ENST00000606615 944 ntBASIC14.63□□□□□ -0.07
LIM2P55344 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.63□□□□□ -0.07
LIM2P55344 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.63□□□□□ -0.07
LIM2P55344 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.63□□□□□ -0.07
LIM2P55344 AL645728.2-202ENST00000641679 227 ntBASIC14.63□□□□□ -0.07
LIM2P55344 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 DRD5P1-201ENST00000456605 1438 ntBASIC14.63□□□□□ -0.07
LIM2P55344 AC023024.2-201ENST00000623561 1993 ntBASIC14.63□□□□□ -0.07
LIM2P55344 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 CICP23-201ENST00000605013 2741 ntBASIC14.63□□□□□ -0.07
LIM2P55344 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.63□□□□□ -0.07
LIM2P55344 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIM2P55344 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.62□□□□□ -0.07
LIM2P55344 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LIM2P55344 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.62□□□□□ -0.07
LIM2P55344 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
LIM2P55344 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.62□□□□□ -0.07
LIM2P55344 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.62□□□□□ -0.07
LIM2P55344 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.62□□□□□ -0.07
LIM2P55344 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.62□□□□□ -0.07
LIM2P55344 AC026410.3-201ENST00000514280 936 ntBASIC14.62□□□□□ -0.07
LIM2P55344 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.62□□□□□ -0.07
LIM2P55344 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LIM2P55344 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LIM2P55344 TP53TG3HP-202ENST00000569755 579 ntBASIC14.62□□□□□ -0.07
LIM2P55344 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.62□□□□□ -0.07
LIM2P55344 SPDYE22P-201ENST00000582158 798 ntBASIC14.62□□□□□ -0.07
LIM2P55344 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.62□□□□□ -0.07
LIM2P55344 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.62□□□□□ -0.07
LIM2P55344 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.62□□□□□ -0.07
LIM2P55344 TMEM261P1-201ENST00000604899 340 ntBASIC14.62□□□□□ -0.07
LIM2P55344 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
LIM2P55344 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LIM2P55344 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 1576.3 ms