Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA1P55317 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
FOXA1P55317 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 AC074044.1-201ENST00000609673 707 ntBASIC14.94□□□□□ -0.02
FOXA1P55317 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.94□□□□□ -0.02
FOXA1P55317 AC012508.2-201ENST00000567613 1472 ntBASIC14.94□□□□□ -0.02
FOXA1P55317 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 AC015656.1-201ENST00000624209 3578 ntBASIC14.94□□□□□ -0.02
FOXA1P55317 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA1P55317 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA1P55317 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.93□□□□□ -0.02
FOXA1P55317 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.93□□□□□ -0.02
FOXA1P55317 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.93□□□□□ -0.02
FOXA1P55317 TOMM22P5-201ENST00000416399 439 ntBASIC14.93□□□□□ -0.02
FOXA1P55317 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
FOXA1P55317 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 KRT18P43-201ENST00000469825 1281 ntBASIC14.93□□□□□ -0.02
FOXA1P55317 SNHG9-202ENST00000564014 471 ntBASIC14.93□□□□□ -0.02
FOXA1P55317 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA1P55317 Z92544.3-201ENST00000624747 417 ntBASIC14.93□□□□□ -0.02
FOXA1P55317 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
FOXA1P55317 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
FOXA1P55317 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA1P55317 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
FOXA1P55317 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA1P55317 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
FOXA1P55317 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 RN7SL618P-201ENST00000477850 296 ntBASIC14.92□□□□□ -0.02
FOXA1P55317 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.92□□□□□ -0.02
FOXA1P55317 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 AL645728.2-202ENST00000641679 227 ntBASIC14.92□□□□□ -0.02
FOXA1P55317 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
FOXA1P55317 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.92□□□□□ -0.02
FOXA1P55317 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
FOXA1P55317 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA1P55317 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms