Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH12P55289 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH12P55289 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CDH12P55289 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CDH12P55289 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.44□□□□□ -0.1
CDH12P55289 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.44□□□□□ -0.1
CDH12P55289 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.44□□□□□ -0.1
CDH12P55289 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.44□□□□□ -0.1
CDH12P55289 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.44□□□□□ -0.1
CDH12P55289 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CDH12P55289 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CDH12P55289 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 RPL5P21-201ENST00000404620 815 ntBASIC14.43□□□□□ -0.1
CDH12P55289 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
CDH12P55289 AC136604.1-201ENST00000418535 575 ntBASIC14.43□□□□□ -0.1
CDH12P55289 FAM8A3P-201ENST00000427218 844 ntBASIC14.43□□□□□ -0.1
CDH12P55289 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.43□□□□□ -0.1
CDH12P55289 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 AP000344.2-201ENST00000512987 629 ntBASIC14.43□□□□□ -0.1
CDH12P55289 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.43□□□□□ -0.1
CDH12P55289 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.43□□□□□ -0.1
CDH12P55289 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.43□□□□□ -0.1
CDH12P55289 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 AC004835.2-201ENST00000603762 682 ntBASIC14.43□□□□□ -0.1
CDH12P55289 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
CDH12P55289 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDH12P55289 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH12P55289 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH12P55289 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH12P55289 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH12P55289 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.42□□□□□ -0.1
CDH12P55289 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH12P55289 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CDH12P55289 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.42□□□□□ -0.1
CDH12P55289 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH12P55289 ACE3P-201ENST00000423435 1973 ntBASIC14.42□□□□□ -0.1
CDH12P55289 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDH12P55289 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.42□□□□□ -0.1
CDH12P55289 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.42□□□□□ -0.1
CDH12P55289 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CDH12P55289 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.42□□□□□ -0.1
CDH12P55289 RPSAP43-201ENST00000402237 625 ntBASIC14.42□□□□□ -0.1
CDH12P55289 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.42□□□□□ -0.1
CDH12P55289 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDH12P55289 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms