Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.07■□□□□ 0.16
CDH6P55285 SRD5A3P1-201ENST00000603021 949 ntBASIC16.07■□□□□ 0.16
CDH6P55285 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDH6P55285 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH6P55285 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CDH6P55285 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDH6P55285 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.06■□□□□ 0.16
CDH6P55285 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH6P55285 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.06■□□□□ 0.16
CDH6P55285 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CDH6P55285 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH6P55285 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.06■□□□□ 0.16
CDH6P55285 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.06■□□□□ 0.16
CDH6P55285 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CDH6P55285 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
CDH6P55285 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDH6P55285 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CDH6P55285 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDH6P55285 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
CDH6P55285 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.05■□□□□ 0.16
CDH6P55285 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.05■□□□□ 0.16
CDH6P55285 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 CICP24-201ENST00000605464 2705 ntBASIC16.05■□□□□ 0.16
CDH6P55285 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.05■□□□□ 0.16
CDH6P55285 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH6P55285 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH6P55285 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CDH6P55285 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CDH6P55285 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CDH6P55285 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.05■□□□□ 0.16
CDH6P55285 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 MIR770-201ENST00000390219 98 ntBASIC16.05■□□□□ 0.16
CDH6P55285 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 MRPS18AP1-201ENST00000414458 589 ntBASIC16.05■□□□□ 0.16
CDH6P55285 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDH6P55285 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH6P55285 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH6P55285 AC104794.3-201ENST00000566840 1248 ntBASIC16.05■□□□□ 0.16
CDH6P55285 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH6P55285 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.05■□□□□ 0.16
CDH6P55285 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms