Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
NKX2-1P43699 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 AC113367.3-201ENST00000508316 1912 ntBASIC12.7□□□□□ -0.38
NKX2-1P43699 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
NKX2-1P43699 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.7□□□□□ -0.38
NKX2-1P43699 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
NKX2-1P43699 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.7□□□□□ -0.38
NKX2-1P43699 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
NKX2-1P43699 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
NKX2-1P43699 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.69□□□□□ -0.38
NKX2-1P43699 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC12.69□□□□□ -0.38
NKX2-1P43699 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
NKX2-1P43699 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
NKX2-1P43699 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 AL450487.1-201ENST00000426799 995 ntBASIC12.69□□□□□ -0.38
NKX2-1P43699 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.69□□□□□ -0.38
NKX2-1P43699 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC12.69□□□□□ -0.38
NKX2-1P43699 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.69□□□□□ -0.38
NKX2-1P43699 VN2R19P-201ENST00000442399 1052 ntBASIC12.69□□□□□ -0.38
NKX2-1P43699 EMBP1-201ENST00000458200 901 ntBASIC12.69□□□□□ -0.38
NKX2-1P43699 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC12.69□□□□□ -0.38
NKX2-1P43699 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC12.69□□□□□ -0.38
NKX2-1P43699 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.69□□□□□ -0.38
NKX2-1P43699 SPTSSB-204ENST00000617024 1292 ntBASIC12.69□□□□□ -0.38
NKX2-1P43699 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.69□□□□□ -0.38
NKX2-1P43699 AC007064.4-201ENST00000637740 555 ntBASIC12.69□□□□□ -0.38
NKX2-1P43699 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 AL928921.2-201ENST00000641325 2442 ntBASIC12.69□□□□□ -0.38
NKX2-1P43699 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
NKX2-1P43699 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
NKX2-1P43699 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC12.69□□□□□ -0.38
NKX2-1P43699 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
NKX2-1P43699 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
NKX2-1P43699 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.68□□□□□ -0.38
NKX2-1P43699 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
NKX2-1P43699 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
NKX2-1P43699 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
NKX2-1P43699 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC12.68□□□□□ -0.38
NKX2-1P43699 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
NKX2-1P43699 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
NKX2-1P43699 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
NKX2-1P43699 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
NKX2-1P43699 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms