Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.18□□□□□ -0.14
RFC3P40938 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RFC3P40938 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFC3P40938 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.17□□□□□ -0.14
RFC3P40938 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 AC092127.1-201ENST00000567093 3455 ntBASIC14.17□□□□□ -0.14
RFC3P40938 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.17□□□□□ -0.14
RFC3P40938 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.17□□□□□ -0.14
RFC3P40938 KRT223P-202ENST00000449164 1292 ntBASIC14.17□□□□□ -0.14
RFC3P40938 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.17□□□□□ -0.14
RFC3P40938 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.17□□□□□ -0.14
RFC3P40938 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
RFC3P40938 AC104989.1-201ENST00000519711 778 ntBASIC14.17□□□□□ -0.14
RFC3P40938 AP001582.1-201ENST00000525856 295 ntBASIC14.17□□□□□ -0.14
RFC3P40938 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
RFC3P40938 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.17□□□□□ -0.14
RFC3P40938 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.17□□□□□ -0.14
RFC3P40938 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.17□□□□□ -0.14
RFC3P40938 AC000095.1-201ENST00000603208 874 ntBASIC14.17□□□□□ -0.14
RFC3P40938 AC107373.2-201ENST00000607735 490 ntBASIC14.17□□□□□ -0.14
RFC3P40938 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.17□□□□□ -0.14
RFC3P40938 COX11-210ENST00000639671 696 ntBASIC14.17□□□□□ -0.14
RFC3P40938 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.17□□□□□ -0.14
RFC3P40938 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RFC3P40938 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RFC3P40938 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.16□□□□□ -0.14
RFC3P40938 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
RFC3P40938 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RFC3P40938 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.16□□□□□ -0.14
RFC3P40938 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RFC3P40938 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.16□□□□□ -0.14
RFC3P40938 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.16□□□□□ -0.14
RFC3P40938 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.16□□□□□ -0.14
RFC3P40938 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 ENPP7P5-201ENST00000541031 1031 ntBASIC14.16□□□□□ -0.14
RFC3P40938 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.16□□□□□ -0.14
RFC3P40938 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.16□□□□□ -0.14
RFC3P40938 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
RFC3P40938 AL022328.1-201ENST00000610050 478 ntBASIC14.16□□□□□ -0.14
RFC3P40938 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.16□□□□□ -0.14
RFC3P40938 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.16□□□□□ -0.14
RFC3P40938 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
RFC3P40938 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.16□□□□□ -0.14
RFC3P40938 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.16□□□□□ -0.14
RFC3P40938 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
RFC3P40938 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RFC3P40938 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms