Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 CAMSAP1-202ENST00000389532 7696 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 POM121L9P-201ENST00000414583 5018 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
HMGB3O15347 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC12.49□□□□□ -0.41
HMGB3O15347 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 AL031133.1-201ENST00000406807 723 ntBASIC12.49□□□□□ -0.41
HMGB3O15347 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 MTRF1LP2-201ENST00000506027 1122 ntBASIC12.49□□□□□ -0.41
HMGB3O15347 MSRA-206ENST00000521209 814 ntTSL 3 BASIC12.49□□□□□ -0.41
HMGB3O15347 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 AC012615.1-201ENST00000565797 1299 ntBASIC12.49□□□□□ -0.41
HMGB3O15347 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 MTDHP3-201ENST00000594186 672 ntBASIC12.49□□□□□ -0.41
HMGB3O15347 MTDHP4-201ENST00000600287 670 ntBASIC12.49□□□□□ -0.41
HMGB3O15347 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 AL121956.5-201ENST00000625261 221 ntBASIC12.49□□□□□ -0.41
HMGB3O15347 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 DNMT1-202ENST00000359526 5206 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 TRAF3-201ENST00000347662 7700 ntTSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.49□□□□□ -0.41
HMGB3O15347 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.49□□□□□ -0.41
HMGB3O15347 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HMGB3O15347 AP000350.6-201ENST00000609510 5637 ntBASIC12.48□□□□□ -0.41
HMGB3O15347 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.48□□□□□ -0.41
HMGB3O15347 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC12.48□□□□□ -0.41
HMGB3O15347 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 KCNQ3-201ENST00000388996 11510 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC12.48□□□□□ -0.41
HMGB3O15347 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC12.48□□□□□ -0.41
HMGB3O15347 AC093724.1-201ENST00000448659 1027 ntBASIC12.48□□□□□ -0.41
HMGB3O15347 NMU-205ENST00000511469 756 ntTSL 3 BASIC12.48□□□□□ -0.41
HMGB3O15347 AC106795.1-205ENST00000512851 1056 ntBASIC12.48□□□□□ -0.41
HMGB3O15347 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC12.48□□□□□ -0.41
HMGB3O15347 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 FICD-205ENST00000552758 603 ntTSL 2 BASIC12.48□□□□□ -0.41
HMGB3O15347 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC12.48□□□□□ -0.41
HMGB3O15347 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 AC021097.1-201ENST00000607902 574 ntBASIC12.48□□□□□ -0.41
HMGB3O15347 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
HMGB3O15347 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC12.48□□□□□ -0.41
HMGB3O15347 SEMA6D-201ENST00000316364 6099 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HMGB3O15347 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms